Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G09_e455_13.seq
         (1566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...   188   9e-48
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...   188   9e-48
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...   188   9e-48
AF106582-3|AAC78214.1|  222|Caenorhabditis elegans Hypothetical ...    29   9.0  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score =  188 bits (458), Expect = 9e-48
 Identities = 96/276 (34%), Positives = 161/276 (58%), Gaps = 1/276 (0%)
 Frame = +3

Query: 81   IIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDAMMFT 260
            +I+ S+S ++SP+VL KKK+G  R+C+DYRK+N  +     PLP IE  +  L    ++T
Sbjct: 1056 VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1115

Query: 261  SLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTKMPFGLCTAPSVFQRFINDVFQDLILD 440
              D+  GF+ + +++ S++ T+F      +E+  +PFGL  +P++FQ  + ++  DL L 
Sbjct: 1116 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-LG 1174

Query: 441  GTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGY-IVFD 617
                 Y+DDL+++ K   +    ++    R  + G+     KC   +K++ YLG+ +  D
Sbjct: 1175 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1234

Query: 618  GQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIAKPLTDLLKKGVIFN 797
            G +   + K   +  F  P N+K LQSFLGL GY+RKFI N++ IA  LT L+   V + 
Sbjct: 1235 G-VETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWI 1293

Query: 798  FDLDCEKAYEELKNILCQSPVLKIYDPNLETXLHTD 905
            ++ + E A++ELK ++CQ+PVL    P++E  L  D
Sbjct: 1294 WEKEQEIAFQELKKLVCQTPVLA--QPDVEAALKGD 1327


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score =  188 bits (458), Expect = 9e-48
 Identities = 96/276 (34%), Positives = 161/276 (58%), Gaps = 1/276 (0%)
 Frame = +3

Query: 81   IIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDAMMFT 260
            +I+ S+S ++SP+VL KKK+G  R+C+DYRK+N  +     PLP IE  +  L    ++T
Sbjct: 959  VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1018

Query: 261  SLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTKMPFGLCTAPSVFQRFINDVFQDLILD 440
              D+  GF+ + +++ S++ T+F      +E+  +PFGL  +P++FQ  + ++  DL L 
Sbjct: 1019 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-LG 1077

Query: 441  GTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGY-IVFD 617
                 Y+DDL+++ K   +    ++    R  + G+     KC   +K++ YLG+ +  D
Sbjct: 1078 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1137

Query: 618  GQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIAKPLTDLLKKGVIFN 797
            G +   + K   +  F  P N+K LQSFLGL GY+RKFI N++ IA  LT L+   V + 
Sbjct: 1138 G-VETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWI 1196

Query: 798  FDLDCEKAYEELKNILCQSPVLKIYDPNLETXLHTD 905
            ++ + E A++ELK ++CQ+PVL    P++E  L  D
Sbjct: 1197 WEKEQEIAFQELKKLVCQTPVLA--QPDVEAALKGD 1230


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score =  188 bits (458), Expect = 9e-48
 Identities = 96/276 (34%), Positives = 161/276 (58%), Gaps = 1/276 (0%)
 Frame = +3

Query: 81   IIKPSQSDFASPIVLAKKKNGKYRLCVDYRKLNTKIIKERFPLPLIEDQIDRLKDAMMFT 260
            +I+ S+S ++SP+VL KKK+G  R+C+DYRK+N  +     PLP IE  +  L    ++T
Sbjct: 970  VIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLYT 1029

Query: 261  SLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTKMPFGLCTAPSVFQRFINDVFQDLILD 440
              D+  GF+ + +++ S++ T+F      +E+  +PFGL  +P++FQ  + ++  DL L 
Sbjct: 1030 VFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDL-LG 1088

Query: 441  GTVLSYLDDLILSFKYEYEGFLKLEMVFKRAEEYGLLFNWEKCIFMQKQINYLGY-IVFD 617
                 Y+DDL+++ K   +    ++    R  + G+     KC   +K++ YLG+ +  D
Sbjct: 1089 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1148

Query: 618  GQISPSKEKVAAVANFKMPRNIKSLQSFLGLTGYFRKFIKNYSLIAKPLTDLLKKGVIFN 797
            G +   + K   +  F  P N+K LQSFLGL GY+RKFI N++ IA  LT L+   V + 
Sbjct: 1149 G-VETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWI 1207

Query: 798  FDLDCEKAYEELKNILCQSPVLKIYDPNLETXLHTD 905
            ++ + E A++ELK ++CQ+PVL    P++E  L  D
Sbjct: 1208 WEKEQEIAFQELKKLVCQTPVLA--QPDVEAALKGD 1241


>AF106582-3|AAC78214.1|  222|Caenorhabditis elegans Hypothetical
           protein W05F2.3 protein.
          Length = 222

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 564 KCIFMQKQINYLGYIVFDGQISPSKEKVAAVANFKMPRNIKS 689
           KC   + ++N+L   V DG  +   E +    N K PRN  S
Sbjct: 175 KCCRRRSRLNHLAAFVNDGCSAQDSESLLPTKNTKRPRNYPS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,477,777
Number of Sequences: 27780
Number of extensions: 530711
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4525199528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)