Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G09_e455_13.seq
         (1566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16380.1 68417.m02480 expressed protein                             31   2.7  
At4g08430.1 68417.m01392 Ulp1 protease family protein similar to...    29   6.3  
At5g45570.1 68418.m05596 Ulp1 protease family protein contains P...    29   8.3  
At5g28235.1 68418.m03421 Ulp1 protease family protein contains P...    29   8.3  

>At4g16380.1 68417.m02480 expressed protein
          Length = 105

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 801 DLDCEKAYEELKNILCQSP 857
           DLDC K Y+++K +LC+ P
Sbjct: 17  DLDCPKCYKKVKKVLCKFP 35


>At4g08430.1 68417.m01392 Ulp1 protease family protein similar to
           At5g45570, At5g28235; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 808

 Score = 29.5 bits (63), Expect = 6.3
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +3

Query: 210 PLIEDQIDRLKDAMMFTSLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTK----MPFGL 377
           P+ +DQ DRLKD   +   D +    + + N +++ Y   +TPR  +   K      + +
Sbjct: 524 PVSDDQFDRLKD---WLEPDFEKEGLNTS-NFNARFYWQIMTPRSDWSTEKYGWLKDYHM 579

Query: 378 CTAPSVFQRFINDVFQDLILDGTVLSYLD-DLILSFKYEYEGFLKLEMVFKRAEEY 542
             A S+F+R  N            +++LD DLI +   +Y+ F      FK  E Y
Sbjct: 580 GAAMSLFRRRFNR--DPSKYPNQRIAFLDQDLISTMLKDYKQFQPDYRCFKFREHY 633


>At5g45570.1 68418.m05596 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At4g08430, At5g28235
          Length = 921

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +3

Query: 210 PLIEDQIDRLKDAMMFTSLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTK----MPFGL 377
           P+ +DQ DRLKD   +   D +    + N N +++ Y   +TPR  +   +      + +
Sbjct: 637 PVSDDQFDRLKD---WLEPDFEKEGLNTN-NFNARFYWQIMTPRNDWPTERYGWLKDYHM 692

Query: 378 CTAPSVFQRFINDVFQDLILDGTVLSYLD-DLILSFKYEYEGFLKLEMVFKRAEEY 542
             A S+F+R  N            +++LD DLI +   +Y+ F      FK  E Y
Sbjct: 693 GAAMSLFRRRFNR--DPSKYPNQRIAFLDQDLISTMLKDYKQFQPDYRCFKFREYY 746


>At5g28235.1 68418.m03421 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; simlar to At4g08430, At5g45570
          Length = 568

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
 Frame = +3

Query: 210 PLIEDQIDRLKDAMMFTSLDLQNGFFHVNVNKDSQKYTSFVTPRGQYEFTK----MPFGL 377
           P+ +DQ DRLKD   +   D +    + N N +++ Y   +TPR  +   +      + +
Sbjct: 360 PVSDDQFDRLKD---WLEPDFEKEGLNTN-NFNARFYWQIMTPRNDWPTERYGWLKDYHM 415

Query: 378 CTAPSVFQRFINDVFQDLILDGTVLSYLD-DLILSFKYEYEGFLKLEMVFKRAEEY 542
             A S+F+R  N            +++LD DLI +   +Y+ F      FK  E Y
Sbjct: 416 GAAMSLFRRRFNR--DPSKYPNQRITFLDQDLISTMLKDYKQFQPDYRCFKFREYY 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,053,355
Number of Sequences: 28952
Number of extensions: 492464
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4212064704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)