Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G07_e439_13.seq
         (1546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    29   1.3  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    28   4.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   4.0  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    27   6.9  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    27   6.9  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    27   6.9  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   9.2  

>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
 Frame = +2

Query: 347 ERDCFDKQKVSEKKRA---EYHDKRQSEWDQFIDDMNFKC--QRIDNAFEEKEE-ELRDL 508
           E+D  D  +  E +     E+ ++ Q+  D+FIDD   +C  +  D+ F+  EE E++ +
Sbjct: 63  EKDLIDADEFEEAETLSDLEHDEEPQTFADEFIDDEAKECEGEEEDSVFDSDEEHEVKPM 122

Query: 509 YAD 517
           ++D
Sbjct: 123 FSD 125


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 554 MDLKGSLVDTKLKIYPTKPLLEFIKKIPSACKTPLNISKLIK 679
           +  +GSL + ++ + P+ PL+    +I   C+  LNI +  K
Sbjct: 233 LSAEGSLYNPRIFLPPSSPLMTLYPRIDDMCEEYLNIIREFK 274


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
 Frame = +2

Query: 296  PVLIEKLNQALQLCEVVERDCFDKQKVSEKKRAEYHDKRQS-EW-DQFIDDMNFKCQRID 469
            P+ IEKL   L   E      F    ++   + + H K ++ EW  ++ID +N   Q ++
Sbjct: 1127 PIKIEKLGDVLT-DEYRHLKEFKGPYLASNGKVDKHGKAEAIEWLSKYIDRLN---QSLE 1182

Query: 470  NAFEEKEEELRDLYADLNHKLSIANN*TMDLKGSLVDTKLKIYPTKPLLEFIKKIPSACK 649
              +++K   L+D       KL +     M L+ S  D KL +   +P+L    +IP  C 
Sbjct: 1183 --YDDKNITLKD-------KLLLLQCLKMLLEVS--DRKLIVEKLRPILLPSFEIPEPCN 1231

Query: 650  TPLNISKLI 676
            T  ++ +LI
Sbjct: 1232 TATSVQELI 1240


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 500 RDLYADLNHKLSIANN*TMDLKGSLVDTKLKIYPTKPLLEFIKKIPSACKT 652
           +D +A  N K   A   T +L   L+DTK+K+   K   E +K +P A  T
Sbjct: 211 KDFFAGFNVKKEGAWR-TSELILYLLDTKMKVISDKEGYESLKDLPPAYST 260


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +2

Query: 206 VENLFTILETLTEIKD-SEADRIKKNGETALPVLIEKLNQALQLCEVVER 352
           V N+F +++T+  I + S  + +K+ G+T + +++E +   LQL  +V R
Sbjct: 281 VTNMFRVVKTMDSIPEFSRLEMLKEIGQTHM-IILEGVQTLLQLSGLVCR 329


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 386 KRAEYHDKRQSEWDQFIDDMNFKCQRIDNAFEEKEEE 496
           K   + D+++S W+ F+D  N+K   I  A  E++ E
Sbjct: 271 KYCTFEDQKRSAWEDFLDCGNYKPVNISVAPIEEQGE 307


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
 Frame = +2

Query: 146 LNGEIKFMLKEFEEKRGDREVENLFTILETLTEIKDSEADRIKKNGET-ALPVLIEKLNQ 322
           LN      L  F+EK  DR+V N   + +    I + ++ +++   +T +LPV     N 
Sbjct: 83  LNSAHNIFLNLFKEKLEDRQVPNEAEVEKLFAPIFNRKSAQLENETDTKSLPVEANNDNS 142

Query: 323 ALQL--CEVVERDCFDKQKVSEKKRAEYHDKRQSEWDQFIDD 442
           A +    E+ ++    KQ  + KK      K+  +WD  I +
Sbjct: 143 ARKKNEYEMKKKGAQSKQTNAPKK----GKKQLRKWDDQITE 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,966
Number of Sequences: 5004
Number of extensions: 76775
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)