Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G07_e439_13.seq
         (1546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1084 - 25928373-25928426,25928551-25928652,25928913-259290...    31   1.8  
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    30   4.3  
07_03_0672 + 20593277-20594026                                         29   7.5  
06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,622...    29   9.9  
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258...    29   9.9  

>12_02_1084 -
           25928373-25928426,25928551-25928652,25928913-25929039,
           25929292-25930730,25931430-25931447
          Length = 579

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
 Frame = +2

Query: 422 WDQFIDDMNFKCQRIDNAFEEKEEELRDLYADLNHKLSIANN*TMDLKGS-LVDTKLKIY 598
           ++  IDD N +   +     EKEE+L  +Y D   KL   NN  + + GS L+    ++ 
Sbjct: 301 YENHIDDANQEETFLRELLIEKEEQLSIMYED-RQKLKYENNQLVAIAGSTLMQHHEQVN 359

Query: 599 PTKPLLEFIKKIPSACKTPLNISKLIKENCXDQNNHES---EDVKQVHLXDKDIINLN*N 769
               L  F +K+   C+  L    LI E+  + N+ +S   E ++Q+++  ++I  L  N
Sbjct: 360 LVNDLTNFREKV---CEQEL----LILESKSESNSMKSSLYEALQQINVCKQEIHGLTDN 412


>07_03_0329 + 16840051-16840917,16840999-16841342,16841444-16841574,
            16841671-16841792,16841877-16841983,16842104-16842236,
            16842342-16842458,16842560-16842667,16842716-16842742,
            16842759-16842830,16843462-16843584,16843671-16843833,
            16844140-16844264,16844355-16844489,16844574-16844677,
            16844772-16844834,16844930-16844993,16845186-16845318,
            16845414-16845487,16845603-16845697,16845799-16845830,
            16846201-16846355
          Length = 1097

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 1397 GGGEPXRGXXXAPXRGGXXKXXAPXVQGEXGXXWGPGGG 1281
            GGG   RG   AP  GG  +       G  G  +G GGG
Sbjct: 26   GGGGRGRGRDGAPYSGGRGRGQDGSYPGGRGGGYGGGGG 64


>07_03_0672 + 20593277-20594026
          Length = 249

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 431 FIDDMNFKCQRIDNAFEEKEEELRDLYADL 520
           F+ + N KC R+ N  +   + + DLY DL
Sbjct: 21  FMQNRNIKCSRLQNIQQSHPKAIMDLYLDL 50


>06_01_0824 - 6219477-6219556,6220427-6220808,6221415-6221448,
            6222214-6222370,6224449-6224575,6224663-6224914
          Length = 343

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 1285 PPGPHXXPXSPXTXGAXFXSXPPRFGAXXXPL*GSPPP 1398
            PP P   P    + GA F + PP F        G+PPP
Sbjct: 118  PPRPAQPPRGRASPGAQFQAPPPAFQGPPYIARGTPPP 155


>04_04_0717 -
           27525117-27525248,27525384-27525549,27525629-27525831,
           27525911-27526048,27526642-27526725,27526864-27526950,
           27527048-27527120,27527169-27527432,27527692-27527768,
           27527886-27527957,27528049-27528209,27528238-27528484,
           27528588-27528707,27528846-27528929,27529205-27529341,
           27529689-27529856,27530093-27530317,27530865-27530952,
           27531033-27531194,27532797-27532919
          Length = 936

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 20/87 (22%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = +2

Query: 443 MNFKCQRIDNAFEEKEEELRDLYADLNHKLSIANN*TMDLKGSLVDTKLKIYPTKPLLEF 622
           M+FK  R   AF+   + L+   A+L+H  ++     +D K   V  + +      L E 
Sbjct: 333 MDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVD-KDKFVWQERQFNLKVDLAEI 391

Query: 623 IKKIPSACKTPL-NISKLIKENCXDQN 700
            +++ + C++ + ++ K I++ C ++N
Sbjct: 392 PERVSTYCESSIADLKKDIQKLCDEKN 418


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,299,588
Number of Sequences: 37544
Number of extensions: 553105
Number of successful extensions: 1290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4977304332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)