Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G06_e431_14.seq
         (1533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0061 - 4812903-4812940,4813140-4813536                           33   0.60 
05_04_0005 + 17063717-17063866,17065737-17065855,17066903-170672...    32   1.0  
05_05_0040 + 21789322-21789734,21790429-21790459,21790730-217908...    30   5.6  
03_06_0225 - 32487592-32487710,32487860-32488325,32489124-324892...    30   5.6  
06_03_0270 + 19009412-19009888,19009936-19011048,19011810-190118...    29   7.4  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    29   7.4  
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229     29   9.8  
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     29   9.8  

>10_02_0061 - 4812903-4812940,4813140-4813536
          Length = 144

 Score = 33.1 bits (72), Expect = 0.60
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 284 SHWLWCQWWWLEACFSSALAAVVG 213
           + W W QWWWLEA   +  +  VG
Sbjct: 39  TRWRWRQWWWLEATRRANSSTAVG 62


>05_04_0005 +
           17063717-17063866,17065737-17065855,17066903-17067218,
           17067579-17067722,17067909-17067926,17068853-17068954,
           17069358-17069461,17069543-17069669,17069809-17069961,
           17070261-17070361,17070538-17070739,17071245-17071469
          Length = 586

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = +1

Query: 70  ARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKA 234
           AR     R W  S AST+     GR    PS +P   + R +SR N+  T A K+
Sbjct: 47  ARWRGGGRMWSSSQASTRGVIEVGRVEAGPSHFPKRPAPRNSSRVNLSRTYAIKS 101


>05_05_0040 +
           21789322-21789734,21790429-21790459,21790730-21790815,
           21791000-21791012
          Length = 180

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -2

Query: 368 WKCGTDKN--ETLQRNQRAAVTASQPPKPGSHWLWCQWWWLEACFSSA 231
           W+CG D +  ++   + R A  A +    G+ W    WWW E  +S+A
Sbjct: 29  WRCGGDSSCVDSTDGSGRLAPLACRGGFGGADWR--PWWWREYAWSAA 74


>03_06_0225 -
           32487592-32487710,32487860-32488325,32489124-32489237,
           32489375-32489602,32489773-32490009,32490490-32490594
          Length = 422

 Score = 29.9 bits (64), Expect = 5.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 335 QRNQRAAVTASQPPKPGSHWLWCQWW 258
           Q  Q AA+TA QP K    W W + W
Sbjct: 230 QARQHAAITAFQPDKNSWGWNWLERW 255


>06_03_0270 +
           19009412-19009888,19009936-19011048,19011810-19011899,
           19011928-19012027,19012135-19012333,19012559-19012679
          Length = 699

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 58  AGNSARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGAS 198
           +G S R     RR    S+S    +   R    PS  PGG S RG+S
Sbjct: 64  SGRSPRSVPPSRRSPTPSSSPSTASAAARSSRTPSAAPGGTSARGSS 110


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 29.5 bits (63), Expect = 7.4
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 49  PRAAGNSARGDESRRR-WLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASR 201
           PR A     G E RRR W P+S       G G   T  S    GR  RGA +
Sbjct: 362 PRCAQGGGGGQEERRRLWAPTSFPPDADGGGGADSTGHSPPRSGRK-RGAGQ 412


>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
          Length = 212

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 94  RWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGAS 198
           R +P +AS   P  PGRR  +P   PGGR  + A+
Sbjct: 156 RLVPVAAS---PGSPGRRLAQPPPRPGGRLAQAAA 187


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
 Frame = +1

Query: 52  RAAGNSARGDESRRRWLPSSASTQLPAG---PGRRPTEP---SEWPGGRSTRGASRYNIK 213
           RA   +   DE RRRWL   A      G    G RP+     SEW G           ++
Sbjct: 474 RAQDKAREADELRRRWLDRCAQLHSHGGGGCGGGRPSSMVTCSEWNGASVLANMQAIPVR 533

Query: 214 PTTAAKAEEKQAS 252
           P   A A    A+
Sbjct: 534 PPPPAAAAAPAAA 546


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,194,129
Number of Sequences: 37544
Number of extensions: 360681
Number of successful extensions: 1009
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)