Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G06_e431_14.seq
         (1533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               30   5.7  
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.7  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         29   7.5  

>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = +1

Query: 52  RAAGNSARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAK 231
           R   N   G E+    +P ++S QLP    +RP E  +  G ++  G SR+N+KP+   +
Sbjct: 537 RPLDNVPNGSENETERVPGNSS-QLPEVASKRP-EILDIEGAKNP-GNSRFNVKPSAPGE 593

Query: 232 A 234
           +
Sbjct: 594 S 594


>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1646

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +1

Query: 58   AGNSARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYNIKPTTAAKAE 237
            +G+S    ES  + +P+S  TQ+   P ++P     +PGG S+     Y+I  +     E
Sbjct: 1206 SGSSGSSMESSPQGMPASGKTQITDNPNKQP----GFPGGFSSASQFPYSIASSPWQNTE 1261

Query: 238  EKQASN 255
               + N
Sbjct: 1262 PTDSLN 1267


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
 Frame = +1

Query: 61   GNSARGDESRRRWLPSSASTQLPAGPGRR-PTEPS----EWPGGRSTRGASRYNIKPTTA 225
            G+   GD + +  L    S++    PG R  T PS    E+PG R+ R ++  +++PTT+
Sbjct: 1971 GSRLNGDPTSKHDLADFESSRELLAPGERHSTVPSKAACEYPGPRAKRNSAPPDLQPTTS 2030


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,798,482
Number of Sequences: 59808
Number of extensions: 385957
Number of successful extensions: 744
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)