Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G06_e431_14.seq
         (1533 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   1.9  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    25   5.8  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = +1

Query: 43  VXPRAAGNSARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASR 201
           + P       R   S  RW PS  S   PA    R T P+ WP  R T    R
Sbjct: 250 IPPSRRNPRRRSPRSGGRW-PSCRSP--PARRRSRSTRPTSWPRSRPTSKPKR 299


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 147 PNRTIRMARREKYKRRQPLQH-QTNNSSQSRRK 242
           P R   +  +++ +RRQ  QH Q +N++Q++R+
Sbjct: 82  PQRQAVVGTQQQQQRRQQQQHQQRSNATQAQRR 114


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,627
Number of Sequences: 2352
Number of extensions: 12890
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 180032985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)