Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G06_e431_14.seq
         (1533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical ...    30   3.8  
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    30   5.0  
Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    29   8.7  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   8.7  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    29   8.7  
AF036693-7|AAO61432.1|  343|Caenorhabditis elegans Hypothetical ...    29   8.7  
AF036693-6|AAK29792.1|  428|Caenorhabditis elegans Hypothetical ...    29   8.7  

>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 58   AGNSARGDESRRRWLPSSASTQLPAGPGRRPTEPSEWPGGRSTRGASRYN--IKPTTAAK 231
            AG+  RG +S  + +PS     +            E P  RSTR AS  N  + P+++A 
Sbjct: 1542 AGSVTRGKKSIIQKMPSPLEVTMEVQEEEEEEAEEERPASRSTRSASVKNTTVDPSSSAL 1601

Query: 232  AEEKQASN 255
            A  K+ ++
Sbjct: 1602 ASTKRTTS 1609


>AF036693-5|AAK29787.1|  434|Caenorhabditis elegans Hypothetical
           protein C49A9.5 protein.
          Length = 434

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -2

Query: 359 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 270
           G   ++T+   QRA VT+    +PG+++LW
Sbjct: 270 GFTTSQTIGEKQRAVVTSIDAKRPGTYYLW 299


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 52  RAAGNSARGDESRRRWLPS-SASTQLPAG--PGRRPTEPSEWPGGRSTRGASRYNIKPTT 222
           +A+ + AR   S  +  PS SAS     G    + P  PS+ P   S R  SR   +PT 
Sbjct: 40  KASKSPARARTSNVKKTPSRSASKSATRGRTASKTPKTPSKTPSSASARSRSRSRGRPTN 99

Query: 223 AAK 231
           A++
Sbjct: 100 ASR 102


>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical
           protein ZK512.3 protein.
          Length = 1418

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 278 WLWCQWWWLEACF 240
           W+W  +WW+E CF
Sbjct: 788 WVWSFFWWIENCF 800


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 100  LPSSASTQLPAGPGRRPTEPSEWPGGRSTRG 192
            + S  STQ+P   G   T+PS   G  ST G
Sbjct: 1149 MTSQGSTQIPGSTGSTVTQPSTGSGSTSTSG 1179


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 278 WLWCQWWWLEACF 240
           W+W  +WW+E CF
Sbjct: 397 WVWSFFWWIENCF 409


>AF036693-7|AAO61432.1|  343|Caenorhabditis elegans Hypothetical
           protein C49A9.9b protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 359 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 270
           G   ++T +  QRA VT+    +PG ++LW
Sbjct: 273 GFTTSQTKEEKQRAVVTSIDEKRPGLYYLW 302


>AF036693-6|AAK29792.1|  428|Caenorhabditis elegans Hypothetical
           protein C49A9.9a protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 359 GTDKNETLQRNQRAAVTASQPPKPGSHWLW 270
           G   ++T +  QRA VT+    +PG ++LW
Sbjct: 273 GFTTSQTKEEKQRAVVTSIDEKRPGLYYLW 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,281,197
Number of Sequences: 27780
Number of extensions: 297859
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4411031650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)