Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G05_e423_13.seq
         (1544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              281   1e-75
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.038
SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.7  
SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)                 30   5.7  
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   10.0 
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     29   10.0 

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  281 bits (688), Expect = 1e-75
 Identities = 134/198 (67%), Positives = 154/198 (77%)
 Frame = +2

Query: 191 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 370
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 371 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 550
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 551 RYVVKRLLPAKEGKENAKPRYKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYA 730
           +YV++R LP KEGK   K + KAPKIQRLVTPVVLQ                    ADYA
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYA 178

Query: 731 KLLAQRKKESKVRRQEEI 784
           KLLA+R KE+K +R E++
Sbjct: 179 KLLAKRAKEAKEKRHEQL 196


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.038
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -2

Query: 337 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 167
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 13/15 (86%), Positives = 13/15 (86%)
 Frame = +1

Query: 940 YYNSLPVVXNVVTGK 984
           YYNSL VV NVVTGK
Sbjct: 4   YYNSLAVVYNVVTGK 18


>SB_46904| Best HMM Match : Pentaxin (HMM E-Value=0.13)
          Length = 323

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -1

Query: 701 WPDVSS*GLDDDVCAAEQPVLLASGF*APCIW 606
           WPDV +  ++ +V   E+P ++ +GF + C+W
Sbjct: 101 WPDVRN-NVNGNVQVKERPEIMLTGFSSKCLW 131


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 294 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 401
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 29.1 bits (62), Expect = 10.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 449 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKENAKPR 610
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG E+  P+
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,887,842
Number of Sequences: 59808
Number of extensions: 635984
Number of successful extensions: 1511
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1508
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5035506333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)