Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G05_e423_13.seq
         (1544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   264   8e-71
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             261   1e-69
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    33   0.50 
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    29   6.2  
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con...    29   8.2  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  264 bits (648), Expect = 8e-71
 Identities = 139/236 (58%), Positives = 162/236 (68%), Gaps = 4/236 (1%)
 Frame = +2

Query: 89  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 268
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 269 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 442
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGE 120

Query: 443 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 616
            ++PGLTD E PR  GPKRASKIRKLFNLKKEDDVR YV   +R    K+GKE +    K
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----K 176

Query: 617 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQEEI 784
           APKIQRLVTP+ LQ                 S  ADY KLLA R KE + RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  261 bits (639), Expect = 1e-69
 Identities = 136/236 (57%), Positives = 162/236 (68%), Gaps = 4/236 (1%)
 Frame = +2

Query: 89  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVDADLLGDEWKGYVLRVAGGNDKQG 268
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 269 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 442
           FPMKQGVLT  RVRLL+ +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG 
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGV 120

Query: 443 QEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYV--VKRLLPAKEGKENAKPRYK 616
            ++PGLTD E PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    K
Sbjct: 121 SDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----K 176

Query: 617 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSAEADYAKLLAQRKKESKVRRQEEI 784
           APKIQRLVTP+ LQ                 S  ADY KLLA R KE + RR E +
Sbjct: 177 APKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 33.1 bits (72), Expect = 0.50
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +2

Query: 458 LTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRL--LPAKEGKENAK 604
           + +G V ++   ++A +  K   +KKEDDVR+  +KRL  +  KE KE  K
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 29.5 bits (63), Expect = 6.2
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +2

Query: 494 KRASKIRKLFN--LKKEDDVRRYVVKRLLPA-KEGKENAK 604
           KR + I KL +  L++ +D+R Y+V  LLP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
           contains Pfam profile PF00297: ribosomal protein L3
          Length = 271

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +2

Query: 356 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGEVPRRLGPKRASKIRKLFNL 529
           G ++    RG +   + S  AL  +  GA   PG      ++P R+G  R +KIRKL  +
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTR-TKIRKLKIV 233

Query: 530 KKEDDVRRYVVKRLLPAKEG 589
           K + ++   ++K  LP K G
Sbjct: 234 KVDKELNVVMIKGALPGKPG 253


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,445,467
Number of Sequences: 28952
Number of extensions: 412032
Number of successful extensions: 822
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4144594560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)