Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G04_e415_14.seq
         (1570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   198   1e-51
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   198   2e-51
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   5.3  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   9.3  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  198 bits (484), Expect = 1e-51
 Identities = 95/143 (66%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
 Frame = +3

Query: 141 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 320
           F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV
Sbjct: 15  FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74

Query: 321 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAP 500
           ++ K V  R + KR+N+RIEHVKHSKCRQDFL RVK NE   KEAKA GK V L+RQPAP
Sbjct: 75  LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134

Query: 501 PKAAHIVSGA-EKPVLLAPIPYE 566
           P  AH VS    +PV L P+ Y+
Sbjct: 135 PATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  198 bits (483), Expect = 2e-51
 Identities = 95/143 (66%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
 Frame = +3

Query: 141 FARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 320
           F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT  ++GV
Sbjct: 15  FQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGV 74

Query: 321 IVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAP 500
           ++ K V  R + KR+N+RIEHVKHSKCRQDFL RVK NE   KEAKA GK V L+RQPAP
Sbjct: 75  LIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAP 134

Query: 501 PKAAHIVSGA-EKPVLLAPIPYE 566
           P  AH VS    +PV L P+ Y+
Sbjct: 135 PAKAHFVSTENNEPVTLHPVAYD 157


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 642 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALXN 806
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 807 SCA 815
           S A
Sbjct: 232 SDA 234


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 311 SRRDREQARPRQDPTETHQHPHRAREALQVQAGLPQARQGERKAVE 448
           +R+ R +   R+ PT  +  P  +   + V   LPQ+   ++K VE
Sbjct: 543 ARKSRARGPVRRPPTSVNTKPSFSVSGIDVFLNLPQSSVMKKKGVE 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,589,250
Number of Sequences: 5004
Number of extensions: 79117
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)