Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G04_e415_14.seq
         (1570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0310 - 16669565-16669822,16670558-16670794                      168   1e-41
03_01_0290 + 2246791-2247027,2248089-2248346                          168   1e-41
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           31   3.3  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.3  
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    30   5.7  
09_01_0142 - 2103224-2103864,2104264-2104399                           29   7.6  
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47...    29   7.6  

>10_08_0310 - 16669565-16669822,16670558-16670794
          Length = 164

 Score =  168 bits (408), Expect = 1e-41
 Identities = 77/145 (53%), Positives = 107/145 (73%)
 Frame = +3

Query: 138 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 317
           LFAR FR  G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+TGRV+NVT  A+G
Sbjct: 14  LFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73

Query: 318 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPA 497
           V +NK+V  RI+ KRI++R+EHV+ S+C ++F  R  +N++L  +AKA G+V++ KRQP 
Sbjct: 74  VEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQ 133

Query: 498 PPKAAHIVSGAEKPVLLAPIPYEFV 572
            PK   +V GA     + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157


>03_01_0290 + 2246791-2247027,2248089-2248346
          Length = 164

 Score =  168 bits (408), Expect = 1e-41
 Identities = 77/145 (53%), Positives = 106/145 (73%)
 Frame = +3

Query: 138 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 317
           LFAR FR  G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+TGRV+NVT  A+G
Sbjct: 14  LFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIG 73

Query: 318 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPA 497
           V +NK+V  RI+ KRI++R+EHV+ S+C ++   R  +N++L  +AKA G+V++ KRQP 
Sbjct: 74  VEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPE 133

Query: 498 PPKAAHIVSGAEKPVLLAPIPYEFV 572
            PK   +V GA     + PIPY+ V
Sbjct: 134 GPKPGFMVEGATLET-VTPIPYDVV 157


>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 279 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 458
           T R  NV      +IV   VRGRI+P  I   ++H +         K+ +EN   L+  +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462

Query: 459 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 557
               +    +Q +P P  + IVS +  P  +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 666 ITIHWPSFYNVV-TGKTLALPNLIALQH 746
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 218 NDVSHFVHFHVRGKWNSSMCAESSGEQVPWY 126
           +D+SH+++F+V G      C  +SG  + WY
Sbjct: 308 SDLSHYLYFNVVGLITRHDCERTSGYAMSWY 338


>09_01_0142 - 2103224-2103864,2104264-2104399
          Length = 258

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = +3

Query: 279 TGRVYNVTAHALGVIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAK 458
           T R  NV      +IV   VRGRI+P  I   ++H +         K+ +EN   L+  +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177

Query: 459 AAGKVVNLKRQPAP-PKAAHIVSGAEKPVLLAPI 557
            +  +    +Q +P P    +VS +  P  +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210


>06_01_0056 -
           478424-478491,478587-478821,478916-478978,479102-479179,
           479263-479354,479788-479866,479971-480104,480184-480523
          Length = 362

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +3

Query: 129 PGXLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAH 308
           PG  +   F T G IP       Y+ G  + +  +G  + G PHK+      R+Y++ + 
Sbjct: 102 PGETWHMVFSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASS 148

Query: 309 ALG 317
           ALG
Sbjct: 149 ALG 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,216,731
Number of Sequences: 37544
Number of extensions: 621267
Number of successful extensions: 1628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5070121196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)