Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G04_e415_14.seq
         (1570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   185   7e-47
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    32   0.96 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    32   0.96 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    32   0.96 
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    31   2.2  
AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical ...    30   5.1  
AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical ...    30   5.1  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  185 bits (451), Expect = 7e-47
 Identities = 92/148 (62%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
 Frame = +3

Query: 138 LFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 317
           +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT  A+G
Sbjct: 14  MFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAVG 73

Query: 318 VIVNKRVRGRILPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGK-VVNLKRQP 494
           +IVNKRVRG ILPKRINIRIEH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P
Sbjct: 74  IIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLP 133

Query: 495 APPKAAHIVSGA-EKPVLLAPIPYEFVA 575
             P+ AH V+    +P LLAP+ +E VA
Sbjct: 134 VAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 283 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 146
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 283 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 146
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 32.3 bits (70), Expect = 0.96
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 283 PVLPWYTLCGIPFCTAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 146
           PV P Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 2.2
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 477 NLKRQPAPPKAAHIVSGAE 533
           NL+R+PAPPK  H+ S AE
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL110490-7|CAD59175.1|  533|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6b protein.
          Length = 533

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 351 LPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA 530
           LP     RI  V+  +  ++  +R KE+E      +   +++ + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 531 EKPVLLAPIPYE 566
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


>AL110490-6|CAB54442.2|  687|Caenorhabditis elegans Hypothetical
           protein Y48B6A.6a protein.
          Length = 687

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 351 LPKRINIRIEHVKHSKCRQDFLKRVKENERLLKEAKAAGKVVNLKRQPAPPKAAHIVSGA 530
           LP     RI  V+  +  ++  +R KE+E      +   +++ + R P PP    I    
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266

Query: 531 EKPVLLAPIPYE 566
              + L  IP E
Sbjct: 267 PPNIPLPTIPQE 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,421,976
Number of Sequences: 27780
Number of extensions: 493710
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)