Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G03_e407_13.seq
         (1562 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    29   0.12 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      25   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   1.5  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +1

Query: 253 QPT*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPPLSTWFPPSPCVWSPSRNSHPSVVS 432
           +P  PA  P+   K   V+ + +R       ++MP ++ W  P    + P+ NS+P++V+
Sbjct: 39  RPLIPATAPQKPDKWEDVMADIER-------VIMPGVTHWHSPRFHAYFPTANSYPAIVA 91


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 464 RCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVN 565
           RC    ++ GS+ WQ  +SC    +  E  ++V+
Sbjct: 68  RCASYIQVSGSKIWQMERSCMCCQESGEREASVS 101


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 76  RGLVSTSKTYLSRNCAVVTLQEIRKTTHPGE 168
           RG+ S  +  + R      L+E  +TTHP E
Sbjct: 327 RGIKSVQEVEMLREKIYGVLEEYTRTTHPNE 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,543
Number of Sequences: 336
Number of extensions: 5173
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 47115500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)