Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_G03_e407_13.seq
(1562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 210 2e-54
03_01_0547 + 4093196-4093657,4094267-4095148 210 2e-54
03_01_0544 + 4082528-4082989,4083585-4084466 210 2e-54
03_01_0543 + 4076981-4077442,4078145-4079026 210 2e-54
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 55 2e-07
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 51 3e-06
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 51 3e-06
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 51 3e-06
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 5.7
05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152 29 10.0
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305... 29 10.0
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 210 bits (514), Expect = 2e-54
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +3
Query: 72 GTRVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 251
G VGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 252 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 431
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 432 AVRDMRQTVAVGVIKAV 482
AVRDMRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 210 bits (514), Expect = 2e-54
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +3
Query: 72 GTRVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 251
G VGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 252 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 431
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 432 AVRDMRQTVAVGVIKAV 482
AVRDMRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 210 bits (514), Expect = 2e-54
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +3
Query: 72 GTRVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 251
G VGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 252 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 431
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 432 AVRDMRQTVAVGVIKAV 482
AVRDMRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 210 bits (514), Expect = 2e-54
Identities = 93/137 (67%), Positives = 116/137 (84%)
Frame = +3
Query: 72 GTRVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 251
G VGFNVKNV+VK+L+RGYVA +SK++P + AA FT+QVI++NHPGQI NGY PVLDCH
Sbjct: 293 GDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCH 352
Query: 252 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 431
T+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP+ VE+F E+PPLGRF
Sbjct: 353 TSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRF 412
Query: 432 AVRDMRQTVAVGVIKAV 482
AVRDMRQTVAVGVIK V
Sbjct: 413 AVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 54.8 bits (126), Expect = 2e-07
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Frame = +3
Query: 81 VGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLN--HPGQISNGYTPVLDCHT 254
V + + +++ G+V S NP +F AQ+ +L + GY VL H+
Sbjct: 288 VRVKLSGIEDEDIMAGFVLS-SIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHS 346
Query: 255 AHIACKFAEIKEKVDRRTGKSTEDNPKS-------IKSGDAAIVNLVPSKPLCVESFQEF 413
C+ ++ E++D + K + K +K+G + + + +C+E+F +F
Sbjct: 347 VVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDF 406
Query: 414 PPLGRFAVR 440
P LGRF +R
Sbjct: 407 PQLGRFTLR 415
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 50.8 bits (116), Expect = 3e-06
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 261 IACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVR 440
++ +I ++++TGK+++ P+ + S A++ + K +CVE F LGR +R
Sbjct: 577 VSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGRVFLR 636
Query: 441 DMRQTVAVGVIKAV 482
T+AVG++ V
Sbjct: 637 SQGNTIAVGIVSRV 650
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 50.8 bits (116), Expect = 3e-06
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +3
Query: 186 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 365
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 366 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 473
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 50.8 bits (116), Expect = 3e-06
Identities = 30/96 (31%), Positives = 49/96 (51%)
Frame = +3
Query: 186 QVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIV 365
+V+VL+ I GY H A + +I +D+ GK ++ P+ +KS A+V
Sbjct: 577 RVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVV 635
Query: 366 NLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 473
+ P+CV+ F + LGR +R T+AVGV+
Sbjct: 636 QVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 29.9 bits (64), Expect = 5.7
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 419 GWEFL-EGLHTQGLGGNQVDNGGITRFNGF 333
G E+L EG + GGN +DN G+T +N F
Sbjct: 365 GMEYLFEGCSSITEGGNSMDNSGVTEYNLF 394
>05_03_0304 - 12000760-12001164,12001176-12001273,12004858-12005152
Length = 265
Score = 29.1 bits (62), Expect = 10.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 355 PPLSTWFPPSPCVW 396
PP+S+ PPSPC W
Sbjct: 175 PPISSGMPPSPCEW 188
>02_03_0125 +
15529391-15529495,15530066-15530226,15530315-15530570,
15531360-15531374,15533608-15533967
Length = 298
Score = 29.1 bits (62), Expect = 10.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 458 RRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSS 571
RRRC+K L+ R W++ C G+ V + N++
Sbjct: 102 RRRCSKSVALRDLRLWEASTMCALLSVGERVRRSSNTA 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,930,091
Number of Sequences: 37544
Number of extensions: 590749
Number of successful extensions: 1691
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1690
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5046916980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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