Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G03_e407_13.seq
         (1562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                228   8e-60
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           48   2e-05
SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)            39   0.009
SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.4  
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   5.8  
SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)                 29   7.7  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  228 bits (558), Expect = 8e-60
 Identities = 101/138 (73%), Positives = 121/138 (87%)
 Frame = +3

Query: 72  GTRVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCH 251
           G  VGFNVKNVSVK+++RG VAGD KNNPP+    FTAQVIV+NHPG+I  GY+PVLDCH
Sbjct: 164 GDNVGFNVKNVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCH 223

Query: 252 TAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRF 431
           TAHIACKF ++ EK+DRR+GK  EDNPK IK+GDAA+V ++PSKP+CVE+F EFPPLGRF
Sbjct: 224 TAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPPLGRF 283

Query: 432 AVRDMRQTVAVGVIKAVN 485
           AVRDM+QTVAVGVIK+V+
Sbjct: 284 AVRDMKQTVAVGVIKSVD 301


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = +3

Query: 294 VDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRD 443
           +D++TGK  +  P+ IK    AI  L     +C+E F +F  +GRF +RD
Sbjct: 496 IDKKTGKKGQTRPRFIKQDQIAIARLETQGVICIEKFSDFQQMGRFTLRD 545


>SB_31292| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0.0015)
          Length = 80

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 18/39 (46%), Positives = 26/39 (66%)
 Frame = +3

Query: 357 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 473
           A V L  S+P+CVE ++++  LGRF +R    T+A GVI
Sbjct: 40  AEVELQTSRPVCVELYKDYKDLGRFMLRYGGNTIAAGVI 78


>SB_49646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 624

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 231 TPVLDCHTAHIACKFAEIKEKVDRRTGKSTEDNPKSIKSGDAAIVNLVPSKPLCVE 398
           TPVL   TAH+  K   ++  +         D P ++KS   ++VN V S  L  E
Sbjct: 223 TPVLRIKTAHVTDKDNRVRSVLIIDNISQAPDTPATLKSSSDSVVNSVGSVGLVAE 278


>SB_57396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +2

Query: 401 LPGIPTPRSFRRA*HEADGRRRCNKGCELQGSRWWQSHQSCRKSHQGQEVASTVNSSVLY 580
           L G+P+   F++  H++  RRR +   E+ GSR +        SH+ Q    +V+ +   
Sbjct: 166 LRGLPSDNVFKKGMHKSLRRRREDVPDEVDGSRGFDVDNEEMVSHENQVFNKSVDLNPGE 225

Query: 581 TTAILHSPKGVQK 619
              +LH  + +++
Sbjct: 226 FANLLHRNRNIKE 238


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +1

Query: 259  T*PANLPKSKRKSTVVLVNQQRTTLNPLNLVMPP 360
            T PA  P + RK+T     Q RTT  P     PP
Sbjct: 1459 TVPATKPPTTRKTTTATTTQGRTTRKPTTTAEPP 1492


>SB_39367| Best HMM Match : RVT_1 (HMM E-Value=2.3e-26)
          Length = 903

 Score = 29.5 bits (63), Expect = 7.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 363 VNLVPSKPLCVESFQEFPPLGRFAVRDMRQ 452
           +++VP++P CV SF EF  +    +RD+ Q
Sbjct: 380 MSVVPAQPQCVASFPEFCAVSVSYIRDLSQ 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,552,964
Number of Sequences: 59808
Number of extensions: 660559
Number of successful extensions: 2040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2033
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)