Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G02_e399_14.seq
         (1549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   3.0  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    28   3.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    28   4.0  
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   9.2  

>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 28/94 (29%), Positives = 38/94 (40%)
 Frame = -3

Query: 515 SRSISPSHCRSDHEVAEFRTDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLC 336
           S SI+PS   +    + F T     P S    S   P  S +K S     +     SS  
Sbjct: 129 STSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKS 188

Query: 335 RHSSSLFCTSCPLSPTSTMSSANIMHQGASSRIS 234
             SSS    S   S +S+ SSA+     +SS+ S
Sbjct: 189 SSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFS 222


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 8/156 (5%)
 Frame = -3

Query: 566 SDTCCQFIPPELILCLISRSISPSHCRSDHEVAEFRTDWYLVPPSDIGFSLEIPQKSQTK 387
           +DT    +P     C  S SI P+   S        T    VPP+    S  IP    + 
Sbjct: 158 TDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPT----VPPTSTS-STSIPIPPTST 212

Query: 386 YSVFVLQTIRPKFSSLCRHSSSL-----FCTSCPLSPT---STMSSANIMHQGASSRISD 231
            S     +  P  S+ C  S+S+        S P++PT   ++ SS +I     S+  +D
Sbjct: 213 SSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 272

Query: 230 VIASIINRK*YGLTADSWCRPTATSKLAVTPAADRT 123
             +S +       T  +   PT  S   VTP    T
Sbjct: 273 TNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPT 308


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 299 LSPTSTMSSANIMH---QGASSRISDVIASIINRK*YGLTADSWCRPTATS 156
           L   S   S  +MH   QG ++ I D+ A   N +  GLT +SW   T  S
Sbjct: 743 LPRASNSPSRPVMHPNTQGINTEIKDMAAQFPNSQTGGLTPNSWSMNTNVS 793


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 400 SRRPSILFLFCKLLGLNSPAFAATHPVCFA-PLVH 299
           + R ++L ++   LG++SP   A HP+  + P VH
Sbjct: 736 NNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVH 770


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 331 WRQRLENLGLIVCRTKTEYLVCDFCGISRLKPISLGGTKYQSVLNSATS 477
           W++ ++N  L +CR     L+   C    LK     GTK Q++  SA S
Sbjct: 304 WKKDIKNNALYICRGTNNELLMSKC--IYLKDWKWCGTKLQNLEKSALS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,796,279
Number of Sequences: 5004
Number of extensions: 76700
Number of successful extensions: 220
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)