Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G02_e399_14.seq
         (1549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0416 - 17399059-17399777,17400560-17400704                       30   4.3  
02_03_0125 + 15529391-15529495,15530066-15530226,15530315-155305...    29   7.5  
08_02_1018 + 23640889-23641245,23641868-23641954,23642063-236421...    29   9.9  
04_03_0130 - 11622139-11623325,11626144-11627116                       29   9.9  

>09_04_0416 - 17399059-17399777,17400560-17400704
          Length = 287

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 358 GLNSPAFAATHPVCFAPLVHSHRPARCHRRTLC 260
           G   P  AA  P+  AP    HR ARC RR+ C
Sbjct: 219 GERPPDLAAPPPLRPAPSPPRHRSARCRRRSSC 251


>02_03_0125 +
           15529391-15529495,15530066-15530226,15530315-15530570,
           15531360-15531374,15533608-15533967
          Length = 298

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -3

Query: 335 RHSSSLFCTSCPLSPTSTMSSANIMHQGASSRISDVIASIINRK*YG-LTADSWCRPTAT 159
           R S S+      L   STM +  ++  G   R S   A  +  K  G L A   CRPTAT
Sbjct: 104 RCSKSVALRDLRLWEASTMCA--LLSVGERVRRSSNTAGCVGEKLAGRLQAGGVCRPTAT 161

Query: 158 SKLAVTPAADRT 123
               ++PA D +
Sbjct: 162 HMGRISPAGDNS 173


>08_02_1018 +
           23640889-23641245,23641868-23641954,23642063-23642161,
           23642255-23642456,23642569-23642690,23642942-23643226
          Length = 383

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 386 YSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSPTSTMSSANIMHQ 255
           YS+  + T++PK +S  R S+S   +S P SP + + +  + ++
Sbjct: 304 YSMATINTVQPKPASTRRGSASASSSSVPESPVAVLDAGCLSYK 347


>04_03_0130 - 11622139-11623325,11626144-11627116
          Length = 719

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 180 GIGC*AILLPVNNGRYYVGYTGR--STLVHNVRR 275
           GIGC    +PV    YYV +  R  +T +HNV R
Sbjct: 191 GIGCCRTSIPVGLQYYYVWFDDRFNTTAIHNVSR 224


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,739,029
Number of Sequences: 37544
Number of extensions: 566955
Number of successful extensions: 1364
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4988906440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)