Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G02_e399_14.seq
         (1549 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z25535-1|CAA80982.1| 1475|Homo sapiens nuclear pore complex prot...    33   2.1  
BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa prot...    33   2.1  
AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa prot...    33   2.1  
AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa prot...    33   2.1  
AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa prot...    33   2.1  

>Z25535-1|CAA80982.1| 1475|Homo sapiens nuclear pore complex protein
           hnup153 protein.
          Length = 1475

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 458 TDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSP 291
           T+  ++PPS IGF+  +P     + S     T+ P  SS   H +++  T+C  +P
Sbjct: 535 TEANVLPPSSIGFTFSVPVAKTAELS-GSSSTLEPIISSSAHHVTTVNSTNCKKTP 589


>BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa
           protein.
          Length = 1475

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 458 TDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSP 291
           T+  ++PPS IGF+  +P     + S     T+ P  SS   H +++  T+C  +P
Sbjct: 535 TEANVLPPSSIGFTFSVPVAKTAELS-GSSSTLEPIISSSAHHVTTVNSTNCKKTP 589


>AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa
           protein.
          Length = 1475

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 458 TDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSP 291
           T+  ++PPS IGF+  +P     + S     T+ P  SS   H +++  T+C  +P
Sbjct: 535 TEANVLPPSSIGFTFSVPVAKTAELS-GSSSTLEPIISSSAHHVTTVNSTNCKKTP 589


>AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa
           protein.
          Length = 1475

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 458 TDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSP 291
           T+  ++PPS IGF+  +P     + S     T+ P  SS   H +++  T+C  +P
Sbjct: 535 TEANVLPPSSIGFTFSVPVAKTAELS-GSSSTLEPIISSSAHHVTTVNSTNCKKTP 589


>AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa
           protein.
          Length = 1475

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 458 TDWYLVPPSDIGFSLEIPQKSQTKYSVFVLQTIRPKFSSLCRHSSSLFCTSCPLSP 291
           T+  ++PPS IGF+  +P     + S     T+ P  SS   H +++  T+C  +P
Sbjct: 535 TEANVLPPSSIGFTFSVPVAKTAELS-GSSSTLEPIISSSAHHVTTVNSTNCKKTP 589


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,586,807
Number of Sequences: 237096
Number of extensions: 3238592
Number of successful extensions: 5800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5800
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23129454548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)