Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G02_e399_14.seq
         (1549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    32   1.3  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   1.7  
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   1.7  
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    31   1.7  
U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical pr...    31   2.9  
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    30   3.8  
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    30   5.1  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 600 KLKGRIYKSIIRPVILYGSECWASKEMDETRLHVAEMRMTR 722
           K++  ++ SII P + YGSE W   +    R+ +    + R
Sbjct: 734 KIRANLFDSIILPALTYGSEAWTFTKALSERVRITHASLER 774



 Score = 31.1 bits (67), Expect = 2.2
 Identities = 23/89 (25%), Positives = 36/89 (40%)
 Frame = +1

Query: 262 IMFADDIVLVGESGQEVQNRLDEWRQRLENLGLIVCRTKTEYLVCDFCGISRLKPISLGG 441
           + FADDIVL+          L E  Q+   +GL +   KT+ L   F   S+   +  G 
Sbjct: 627 LRFADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSK---VYFGS 683

Query: 442 TKYQSVLNSATSWSLLQCDGEIDREIRQR 528
               + L+    +  L     +  EI +R
Sbjct: 684 PSPTTQLDDVDEYIYLNAQNNLMPEIHRR 712


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 600  KLKGRIYKSIIRPVILYGSECWASKEMDETRLHVAEMRMTR 722
            K++  ++ SI+ P + YGSE W   +    R+ +    + R
Sbjct: 909  KIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLER 949


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 600 KLKGRIYKSIIRPVILYGSECWASKEMDETRLHVAEMRMTR 722
           K++  ++ SI+ P + YGSE W   +    R+ +    + R
Sbjct: 648 KIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLER 688


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 600 KLKGRIYKSIIRPVILYGSECWASKEMDETRLHVAEMRMTR 722
           K++  ++ SI+ P + YGSE W   +    R+ +    + R
Sbjct: 260 KIRANLFDSIVLPALTYGSEAWTFTKALSERVRITHASLER 300



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 262 IMFADDIVLVGESGQEVQNRLDEWRQRLENLGLIVCRTKTEYLVCDFCGISRL 420
           + FADDIVL+          L E  Q+   +GL +   KT+ L   F   S++
Sbjct: 149 LRFADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLRNRFADPSKV 201


>U40028-6|AAA81117.1|  241|Caenorhabditis elegans Hypothetical
           protein T05A7.2 protein.
          Length = 241

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 663 WASKEMDETRL-HVAEMRMTRWDVCXHK-NGY 752
           W S E D   + +V E+ MTR D C H  NGY
Sbjct: 137 WISSECDNVEMAYVCEIPMTRADSCAHNYNGY 168


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 30.3 bits (65), Expect = 3.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 600 KLKGRIYKSIIRPVILYGSECWA-SKEMDETRLHVAEMRMTR 722
           +L+  ++ S + P + YGSE W  +KE+ E R+ V    + R
Sbjct: 682 RLRANLFDSTVLPALTYGSEAWTFTKELAE-RVRVTHAALER 722



 Score = 29.5 bits (63), Expect = 6.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 262 IMFADDIVLVGESGQEVQNRLDEWRQRLENLGLIVCRTKTEYL 390
           + FADDIVLV  + +     L E  ++  ++GL +   KT+ L
Sbjct: 570 LRFADDIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTKVL 612


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 600 KLKGRIYKSIIRPVILYGSECWA-SKEMDETRLHVAEMRMTR 722
           +L+  ++ S + P + YGSE W  +KE+ E R+ V    + R
Sbjct: 45  RLRANLFDSTVLPALTYGSEAWTFTKELVE-RVRVTHAALER 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,555,625
Number of Sequences: 27780
Number of extensions: 451410
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4462926140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)