Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_G01_e391_13.seq
         (1578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    34   0.36 
09_03_0187 - 13253787-13254509                                         30   5.8  

>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 33.9 bits (74), Expect = 0.36
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = -2

Query: 278 LALFPWARLIERVEAGAR------RQKPPAGPRRQDAGGHD**HSPRPPITATTTILAVM 117
           +A  PW  ++E +E G +      RQ P AGPR       +  H P+P   A  +  A  
Sbjct: 1   MAKSPWRTVLEPLEHGEQHRLEEMRQHPVAGPRASSGDAAERRHLPKPAAAANCSSSA-- 58

Query: 116 GSATPQNXWLSXSCR 72
            +ATP N   S S R
Sbjct: 59  -TATPPNAATSPSKR 72


>09_03_0187 - 13253787-13254509
          Length = 240

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 166 CHQSCPPASWRRGPAGGFWRRAPA 237
           C    PP+SW  GP GG W  A A
Sbjct: 147 CSDLEPPSSWLLGPLGGGWADADA 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,327,333
Number of Sequences: 37544
Number of extensions: 433177
Number of successful extensions: 984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5104927520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)