Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      29   2.2  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    27   6.7  

>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 351 SERAIPHL--RDIFGLNQQYDGKTFDENDDNARKTRKKKDEYRTYANGDVKTLERHLSMK 524
           SE ++P    R  F L +  +   FDEN +  RK    + +Y  + NG V   +   + +
Sbjct: 149 SEISVPSSPKRMSFNLKEDMEEGDFDENGNFIRKNYDPESQYDAWLNGSVSNKKSIAAAR 208

Query: 525 KTIRKK 542
           +  +K+
Sbjct: 209 EAEQKR 214


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -1

Query: 220 VNNNPMFAV-YTLK*NTARFSYKKRQRCFFVISTLFASEI*RSLNTECNPCRI 65
           + NNP   V YT++  T    Y  ++ C FV+STL+       +  E N C +
Sbjct: 66  IENNPKGDVHYTIEVETED-PYVTKESCLFVLSTLYCDS--PRIPAEVNVCSV 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,816,764
Number of Sequences: 5004
Number of extensions: 62706
Number of successful extensions: 135
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 836477428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)