Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0691 - 26315738-26315848,26315939-26316163,26316249-263166...    31   3.1  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    30   5.4  

>11_06_0691 -
           26315738-26315848,26315939-26316163,26316249-26316602,
           26316681-26316795,26316882-26316925,26317026-26317122,
           26317243-26317406,26317499-26317726,26317903-26318222,
           26320028-26320136
          Length = 588

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 417 FDENDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMR 551
           F + + +AR+TR   D +   ++ D +TLE H     + +KK+ R
Sbjct: 102 FRQAESSARQTRINLDSFGFSSDDDFETLESHCDRSVSTQKKVNR 146


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 21/90 (23%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +3

Query: 405 DGKTFDENDDNARKTRKKKDEYRTYANGDVKTLER--HLSMKKTIRKKIMRDLQQAFVED 578
           DG   ++ND +A+K +KKK   +  A+G+   L++   ++ ++T  +   +  ++  +E+
Sbjct: 456 DGGEKEKNDTSAKKNKKKKS--KAEADGEEMDLDKPAKVAAEETDPENENKKKKKHKLEE 513

Query: 579 PNEFKVXIRALRNSKRN*APKLLKSKRTYA 668
           P + ++ +    N +++  PK  K K+  A
Sbjct: 514 PQDQEMAVNG--NLEQDETPKKKKKKKPEA 541


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,601,725
Number of Sequences: 37544
Number of extensions: 434684
Number of successful extensions: 984
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4791670604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)