Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50343| Best HMM Match : MAP (HMM E-Value=3.4)                       32   1.4  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              29   9.6  
SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.6  

>SB_50343| Best HMM Match : MAP (HMM E-Value=3.4)
          Length = 243

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
 Frame = +3

Query: 390 LNQQYDGKTFDENDDNARKTRKKKDEYRTYANGDVK--TLERHLSMKKTIRKKIMR 551
           LNQQY  + FD++      T K+  E R+    D+K  ++++    K++I+K+ M+
Sbjct: 174 LNQQYAPEPFDQSRGLMPLTGKRSSEKRSTNKRDIKKTSIKKRSMKKRSIKKRSMK 229


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 19/88 (21%), Positives = 43/88 (48%)
 Frame = +3

Query: 396 QQYDGKTFDENDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQAFVE 575
           +Q +GK  DE++D     +KKK + +    G  +  ++     K + K++ + L+Q  +E
Sbjct: 385 EQEEGKEGDEDEDGEGGDKKKKKK-KKKKKGVEEEEKKVKKPNKALVKQMQQQLEQLKLE 443

Query: 576 DPNEFKVXIRALRNSKRN*APKLLKSKR 659
           +  + +     +R  +   A +L K ++
Sbjct: 444 EERQRQAEEEKIRQREEAEARRLEKDRK 471


>SB_6215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +3

Query: 390 LNQQYDGKTFDENDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQA- 566
           +N+ YD   F   +   +K +K ++    Y N   + L  H +MK+        D  QA 
Sbjct: 1   MNRPYDLVAFMTKEQEVKKAKKDQEHEEVYKNFHHQKLVNHGTMKEESEIVTDSDEDQAK 60

Query: 567 --FVEDPNEFKVXIR 605
             F +DP   KV  R
Sbjct: 61  EFFAKDPFCNKVKYR 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,330,240
Number of Sequences: 59808
Number of extensions: 484141
Number of successful extensions: 1273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4847701901
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)