Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...    25   4.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   9.9  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 375 RDIFGLNQQYDGKTFDENDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRD 554
           RD     ++YD  TF++ + N R        +R    GD+ TL     + KT+R  ++++
Sbjct: 83  RDYLQFIRKYD--TFEKRNRNMRLHLSPC--FRDVEAGDIVTLGECRPLSKTVRFNVLKE 138

Query: 555 LQQA 566
            + A
Sbjct: 139 SKMA 142


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 420 DENDDNARKTRKKKDEYRTYAN 485
           DE++ N  + +KKKD Y++  N
Sbjct: 449 DEHNKNFYELKKKKDHYQSLRN 470


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,120
Number of Sequences: 2352
Number of extensions: 15887
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 175156245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)