Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    31   1.6  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    31   1.6  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    31   1.6  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    31   2.8  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    30   4.9  

>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 29/100 (29%), Positives = 43/100 (43%)
 Frame = +3

Query: 426 NDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVXIR 605
           NDD  R   K+  +  T  N D+KT E     K+  +KK +R  +    E        +R
Sbjct: 721 NDDEKRSEEKESKDQET--NDDLKT-ESGQEKKRRKKKKKLRSKKTREHE--------LR 769

Query: 606 ALRNSKRN*APKLLKSKRTYARTTRRSWTYYAERRGARKC 725
            L+NS    +P L+     Y   T  S + Y  +  +RKC
Sbjct: 770 FLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSRKC 809


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 29/100 (29%), Positives = 43/100 (43%)
 Frame = +3

Query: 426 NDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVXIR 605
           NDD  R   K+  +  T  N D+KT E     K+  +KK +R  +    E        +R
Sbjct: 721 NDDEKRSEEKESKDQET--NDDLKT-ESGQEKKRRKKKKKLRSKKTREHE--------LR 769

Query: 606 ALRNSKRN*APKLLKSKRTYARTTRRSWTYYAERRGARKC 725
            L+NS    +P L+     Y   T  S + Y  +  +RKC
Sbjct: 770 FLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSRKC 809


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
           potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 29/100 (29%), Positives = 43/100 (43%)
 Frame = +3

Query: 426 NDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQAFVEDPNEFKVXIR 605
           NDD  R   K+  +  T  N D+KT E     K+  +KK +R  +    E        +R
Sbjct: 721 NDDEKRSEEKESKDQET--NDDLKT-ESGQEKKRRKKKKKLRSKKTREHE--------LR 769

Query: 606 ALRNSKRN*APKLLKSKRTYARTTRRSWTYYAERRGARKC 725
            L+NS    +P L+     Y   T  S + Y  +  +RKC
Sbjct: 770 FLKNSGNQASPLLMDCSTQYEIFTVESGSQYDVKGRSRKC 809


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
 Frame = +3

Query: 399 QYDGKTFDEND-DNARKTRKKKDEYRT-YANGDVKTLERHLS-MKKTIRKKIMRDLQQAF 569
           ++DGK FDE D D  R   K  D+ +T + N  V +++  ++ + + +  K+  DL+  F
Sbjct: 23  KHDGKPFDEKDLDKIRLGTKGFDKVKTIHTNWYVHSMKALIAQLSRNLLPKLNDDLKTEF 82

Query: 570 VE 575
           VE
Sbjct: 83  VE 84


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +3

Query: 393 NQQYDGKTFDEN-DDNARKTRKK-KDEYRTYANGDVKTLERHLSMKKTIRKKIMRDLQQA 566
           N +Y  + +DE  D+  RK +KK +D++R    G+    +  +++K  ++K+  R   +A
Sbjct: 116 NVEYVKRDYDEEFDEFGRKKKKKGEDQFRDMEEGEASD-DEEIAVKDDLKKRTPRGEDEA 174

Query: 567 FVED 578
             +D
Sbjct: 175 DEDD 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,976,797
Number of Sequences: 27780
Number of extensions: 386599
Number of successful extensions: 1375
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4308364692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)