Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   3.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   3.9  
DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    23   9.0  
DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex det...    23   9.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   9.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   9.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 SFFFLDLTMRWL*FHIRQDRRFL 339
           SFF  DL+ RW+ F+   D  FL
Sbjct: 111 SFFNDDLSTRWIAFNCLSDTIFL 133


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 SFFFLDLTMRWL*FHIRQDRRFL 339
           SFF  DL+ RW+ F+   D  FL
Sbjct: 111 SFFNDDLSTRWIAFNCLSDTIFL 133


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 SFFFLDLTMRWL*FHIRQDRRFL 339
           SFF  DL+ RW+ F+   D  FL
Sbjct: 111 SFFNDDLSTRWIAFNCLSDTIFL 133


>DQ325067-1|ABD14081.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325066-1|ABD14080.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325065-1|ABD14079.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325064-1|ABD14078.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325063-1|ABD14077.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>DQ325061-1|ABD14075.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 35  SRRRYSRSREREQKSYKNEREYREYRETSRERSR 68


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 283 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 316


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 651 SKRTYARTTRRSWTYYAERRGARKCGRNNRQRRK 752
           S+R Y+R+  R    Y   R  R+    +R+R +
Sbjct: 284 SRRRYSRSREREQKSYKNEREYREYRETSRERSR 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,230
Number of Sequences: 438
Number of extensions: 5401
Number of successful extensions: 25
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 52276125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)