Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F11_e470_11.seq
         (1498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    33   0.37 
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    31   2.6  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    29   6.0  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    29   6.0  

>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 33.5 bits (73), Expect = 0.37
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 420 DENDDNARKTRKKKDEYRTYANGDVKTLERHLSMKKTIRKKIMR 551
           DE+D ++RK RKK+ E R    G  +  +R    K+  RKKI R
Sbjct: 29  DESDSSSRKWRKKQKERRKSDGGSYEREKRRKREKERKRKKIER 72


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +3

Query: 342 KMTSERAI--PHLRDIFGLNQQYDGKTFDENDDNARKTRKKKDEYRTYANGDVKTLERHL 515
           KM  + A+  P L    G  +Q    +  + +++ +K  KKKD+ R  +  + +      
Sbjct: 14  KMKKKMALDTPELDSKKGKKEQKLKLSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSS 73

Query: 516 SMKKTIRKKIMRDLQQAFVEDPN 584
           S KK   KK+   ++   V++PN
Sbjct: 74  SEKKKSSKKVKLGVEDVEVDNPN 96


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -2

Query: 183 NKTQHVFHTKKGNGVFLLLALCSRVRYNVHSTRSVTRAEXPAARGXPLVXRAAAT 19
           +KT+H  H KK N V+LL  + S  R NV   + +      ++RG  L+ R   T
Sbjct: 232 SKTKH-HHDKKKNDVYLLPDMKSFKRCNVARGKKLVARGGSSSRGFKLLLRKVHT 285


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 420 DENDDNARKTRK--KKDEYRTYANGDVKTLERHLS 518
           DE DD  RK     KK + R   +GD K++ RH+S
Sbjct: 435 DETDDVLRKGHSFIKKSQVRENPSGDFKSMYRHIS 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,484,941
Number of Sequences: 28952
Number of extensions: 343868
Number of successful extensions: 852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 3990377088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)