Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F10_e462_12.seq
         (1188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    43   1e-04
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    39   0.002
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    36   0.011
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    30   0.55 
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    29   1.7  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
 Frame = +1

Query: 136 SEQDEEIKAKVEPLKKEGYECT---CGNVFRRRSRMETCLKSHNMYDDTASYPC--MTCP 300
           +E   EI++K     K+ + C    CG  + R S +E  L++H+   +   + C    C 
Sbjct: 5   NELSIEIESKNLRSAKKIFHCPYEECGKKYSRPSLLEQHLRTHS---NERPFVCDYTGCS 61

Query: 301 RHFKSKEDLALHRR-RVHRKRFPCKF--CPTDYNTRKELFKHLQIHQK 435
           + F  K  L +H+R   + K F C +  C   + T++ L +H+++H+K
Sbjct: 62  KAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERHIEVHRK 109


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
 Frame = +1

Query: 85  FIKGQKTRQQNRTKKLI----SEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMETCLKS 252
           ++  + TR ++R+   +    SE     KAK E   +  Y CT     +R +R    LKS
Sbjct: 531 YLSVRNTRPRSRSLNSLVGNKSENSSSSKAKSESKSQGNYVCTFAGCNKRFTRAYN-LKS 589

Query: 253 H-NMYDDTASYPCMTCPRHFKSKEDLALHRR-RVHRKRFPCKFCPTDYNTRKELFKH 417
           H N + +   + C  C + F  + D   H +     K F C  C   +     L +H
Sbjct: 590 HMNTHTNYRPFQCSICKKSFARQHDKRRHEQLHTGIKAFACVTCNQRFARMDALNRH 646


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 247 KSHNMYDDTASYPCMTCPRHFKSKEDLALHRRRVHR-KRFPCKFCPTDYNTRKELFKHL- 420
           ++H + D         CP+ F  KE L  H R     K F C FC   +     L +H+ 
Sbjct: 17  RAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQ 76

Query: 421 QIH-QKVQLMEYKVIS 465
           Q+H QK  L E ++++
Sbjct: 77  QMHLQKQNLSERRMLN 92



 Score = 26.2 bits (55), Expect = 8.9
 Identities = 13/75 (17%), Positives = 35/75 (46%)
 Frame = +1

Query: 136 SEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMETCLKSHNMYDDTASYPCMTCPRHFKS 315
           +E+  + +++   L    + CT  +  +  +R E   +    +++  ++ C  C R F  
Sbjct: 8   TEKPLKKRSRAHRLGDPRFYCTYPDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFAR 67

Query: 316 KEDLALHRRRVHRKR 360
            + L  H +++H ++
Sbjct: 68  SDVLNRHVQQMHLQK 82


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +1

Query: 115 NRTKKLISEQDEEIKAKVEPLKKEGYEC-TCGNVFRRRSRMETCLKSH-NMYDDTAS--- 279
           + +K + S    +      P K + Y C TC   F R   ++  ++SH N    T S   
Sbjct: 45  SNSKPVASSTAAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCSEID 104

Query: 280 -YPCMTCPRHFKSKEDLALHRRRVHRKRFP 366
             P   C R F  ++ L  H++++HR   P
Sbjct: 105 GLPT-GCGRQFSRRDLLLRHQQKIHRNPQP 133


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +1

Query: 286 CMTCPRHFKSKEDLALHRR-RVHRKR 360
           C+ C R+F S + L +H++ +VH++R
Sbjct: 58  CIECARYFDSSQALLVHKKGKVHKRR 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,961,061
Number of Sequences: 5004
Number of extensions: 72915
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 639490422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)