Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F10_e462_12.seq
(1188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 37 0.036
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 33 0.44
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 33 0.58
01_06_1614 - 38648495-38649706 33 0.58
11_04_0142 + 14027726-14029081 30 3.1
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 30 3.1
08_02_1329 - 26182762-26183007,26183149-26183249,26183533-261836... 29 7.2
07_03_1165 - 24459156-24460139 29 7.2
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 9.5
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 36.7 bits (81), Expect = 0.036
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +1
Query: 286 CMTCPRHFKSKEDLALHRRRVHRKR-------FPCKFCPTDYNTRKELFKHLQIHQKVQL 444
C C + F + L LH VH+K + C C + R+ L +H+Q Q
Sbjct: 465 CKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERHVQEKHGAQY 524
Query: 445 MEYKVI 462
++Y +
Sbjct: 525 LQYSTL 530
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 64 QXIRHEGFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRME-- 237
Q R + F+ GQ N K +E E I + ++ ++KE C C RR +
Sbjct: 83 QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGCRRLLEVHPL 142
Query: 238 TCLKSHNM 261
TC +S NM
Sbjct: 143 TCCESRNM 150
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 32.7 bits (71), Expect = 0.58
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 274 ASYPCMT--CPRHFKSKEDLALHRRRVHRKRFPCKFCPTDYNTRKELFKHLQIH 429
A +PC C F +++DL LH+R + P K C + K L +H ++H
Sbjct: 1228 AKFPCDIEGCDMSFSTQQDLLLHKRDI----CPVKGCKKKFFCHKYLLQHRKVH 1277
>01_06_1614 - 38648495-38649706
Length = 403
Score = 32.7 bits (71), Expect = 0.58
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 346 VHRKRFPCKFCPTDYNTRKELFKHLQIHQ 432
V R FPC C ++ +RK + H+++HQ
Sbjct: 100 VARVAFPCHVCSKEFGSRKAVHGHMRVHQ 128
>11_04_0142 + 14027726-14029081
Length = 451
Score = 30.3 bits (65), Expect = 3.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +1
Query: 352 RKRFPCKFCPTDYNTRKELFKHLQIHQK 435
R+ F C+ C +++TRK + H+++H++
Sbjct: 114 REVFACRICRKEFDTRKAVDGHMRVHRQ 141
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 30.3 bits (65), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 181 KEGYECTCGNVFRRRSRMETCLKSHNMYDDTASYPCM 291
K GY C C + + ++ K N D A+YPCM
Sbjct: 36 KGGYRCKCSHGYEGNPYIKDGCKDINECLDNATYPCM 72
>08_02_1329 -
26182762-26183007,26183149-26183249,26183533-26183602,
26183692-26183895,26186435-26186941,26188672-26188677
Length = 377
Score = 29.1 bits (62), Expect = 7.2
Identities = 14/58 (24%), Positives = 21/58 (36%)
Frame = -1
Query: 840 GXGGFXPQIWXGKKXXGLGXGXPRGKLXXXPQFXXXFSXGXGTKLKKKAXXGXXKXPD 667
G G + + + G G G PRG P S + +K+A G + D
Sbjct: 144 GSGSYGGGLVANSRAKGGGGGAPRGNETVIPNIIRIMSTASTARSRKRAHDGSRQKVD 201
>07_03_1165 - 24459156-24460139
Length = 327
Score = 29.1 bits (62), Expect = 7.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +1
Query: 361 FPCKFCPTDYNTRKELFKHLQIH 429
FPC C ++ +RK + H+++H
Sbjct: 113 FPCHLCNKEFGSRKAVHGHMRVH 135
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 9.5
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 79 EGFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVFRRRSRMETCLKSHN 258
E QKT +N ++ I E+D I+ + L+KE + FRRR+ N
Sbjct: 1475 EDLKSSQKTTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQN 1534
Query: 259 M 261
M
Sbjct: 1535 M 1535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,994,981
Number of Sequences: 37544
Number of extensions: 578004
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3619931772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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