Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F10_e462_12.seq
         (1188 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ...    32   0.64 
At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein ...    32   0.85 
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ...    31   1.5  
At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein ...    30   3.4  
At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein ...    29   4.5  
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden...    29   7.9  
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden...    29   7.9  
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden...    29   7.9  

>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 446

 Score = 32.3 bits (70), Expect = 0.64
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
 Frame = +1

Query: 235 ETCLKSHNMYDDTASYPCMTCPRHFKSKEDLALHRRRVHRKRFPCKFCPTDYNTRKELF- 411
           E    S N    T  + C  C + FK  ++L LHRR  H   +  K        +K+++ 
Sbjct: 53  EVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRG-HNLPWKLKQRTNKEQVKKKVYI 111

Query: 412 ---KHLQIHQKVQ----LMEYKVISEVVKGRQKLKCFMCSKTYSELSELK 540
              K    H   +    L   K       G +K KC  CSK Y+ +S+ K
Sbjct: 112 CPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWK 161


>At5g43540.1 68418.m05323 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 137

 Score = 31.9 bits (69), Expect = 0.85
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 346 VHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEV-VKGRQKLKCF 501
           V R+ + C FC   +   + L  H+ IH++ +L + KV ++  V   Q  +CF
Sbjct: 30  VTRRMYECTFCKRGFTNAQALGGHMNIHRRDRLNKAKVQNDADVALSQTHRCF 82


>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
           (ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
           type
          Length = 178

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +1

Query: 358 RFPCKFCPTDYNTRKELFKHLQIHQK----VQLMEYKVISEVVKGRQKLKCFMCSKTY 519
           +F CK C   +++ + L  H   H+K    V+  + K +S   KG    KC +CS+++
Sbjct: 46  QFECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSF 103


>At4g02670.1 68417.m00362 zinc finger (C2H2 type) family protein
           similar to potato PCP1 zinc finger protein, GenBank
           accession number X82328 contains Pfam domain, PF00096:
           Zinc finger, C2H2 type
          Length = 402

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 RFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKGRQKLKCFMCSKT 516
           RF C+ C    N   +  ++LQ+H++   + +K+  +  K +QK K ++C +T
Sbjct: 81  RFVCEIC----NKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYVCPET 129


>At3g53600.1 68416.m05920 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 175

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = +1

Query: 349 HRKRFPCKFCPTDYNTRKELFKHLQIHQKVQLMEYKVISEVVKGRQK----LKCFMCSKT 516
           H   F CK C   +++ + L  H   H+K +L+   V  E VK R K     KC +C + 
Sbjct: 45  HNNHFECKTCNRKFDSFQALGGHRASHKKPKLI---VDQEQVKHRNKENDMHKCTICDQM 101

Query: 517 Y 519
           +
Sbjct: 102 F 102


>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
           identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 64  QXIRHEGFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTC 204
           Q  R + F+ GQ     N  K   +E  E I A ++ ++KE   C C
Sbjct: 83  QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDC 129


>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
           identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
           thaliana}
          Length = 447

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 64  QXIRHEGFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTC 204
           Q  R + F+ GQ     N  K   +E  E I A ++ ++KE   C C
Sbjct: 84  QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDC 130


>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
           identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
           thaliana}
          Length = 449

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 64  QXIRHEGFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTC 204
           Q  R + F+ GQ     N  K   +E  E I A ++ ++KE   C C
Sbjct: 84  QIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDC 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,588
Number of Sequences: 28952
Number of extensions: 435900
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,070,560
effective HSP length: 83
effective length of database: 9,667,544
effective search space used: 3016273728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)