Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F09_e454_11.seq
         (1563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023847-3|CAA19549.2|  309|Caenorhabditis elegans Hypothetical ...    30   5.1  
AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear horm...    29   8.9  

>AL023847-3|CAA19549.2|  309|Caenorhabditis elegans Hypothetical
           protein Y57A10C.7 protein.
          Length = 309

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 726 ILPIPLYYLVIPFTVLTIAENIEGINXXXXXXXXFMXQILMNG 854
           IL   L++L++P  ++T  E I G+N        ++  IL+NG
Sbjct: 228 ILFCSLFFLIVPSFLMTGYEEITGVNLFSEVGPFYICAILING 270


>AC024776-13|AAK68483.1|  374|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 122 protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 361 VFLFYKEDHNFFSFFIESRII 423
           +++  K+DH+FF +F+ES+ I
Sbjct: 354 MYIMNKQDHSFFKYFVESKRI 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,763,807
Number of Sequences: 27780
Number of extensions: 479518
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)