Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F08_e446_12.seq
         (1590 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 15/74 (20%), Positives = 25/74 (33%)
 Frame = +3

Query: 687  HAEGVLLAADETDSXSLHFEGGPASHFLVTLLDY*NIQRAEETLAX*CRSPIPGSQSTFC 866
            + E VL+  D+T++           H  +   +        ET+       +PG   T  
Sbjct: 943  NTERVLVPGDQTEAGVFTLRPATTYHIRIVAENEIGSSEPSETVTIITAEEVPGGPPTSI 1002

Query: 867  RVVRGXCXGGLXYW 908
            RV        + YW
Sbjct: 1003 RVETNDQHSLVVYW 1016


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/45 (22%), Positives = 13/45 (28%)
 Frame = +2

Query: 1379 IHGXXXAPTPPPTGXXXRGRXXXXSXXXXPXXPPPRRPXXGXPPS 1513
            ++G     +PPP                    PPP     G P S
Sbjct: 2    MNGGIYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPAS 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,295
Number of Sequences: 336
Number of extensions: 5169
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 48037325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)