Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F08_e446_12.seq
(1590 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938 36 0.067
01_01_1137 + 9017211-9018584 31 2.5
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 30 5.8
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 30 5.8
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 30 5.8
07_01_0080 + 587674-588510 25 7.1
>02_05_0727 + 31264798-31265297,31265962-31266417,31266503-31266938
Length = 463
Score = 36.3 bits (80), Expect = 0.067
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 612 DDSPVNYGYVFALCEHMGCGTWTVTH 689
D SP YG+VF C+H+ GT TVTH
Sbjct: 254 DVSPDFYGWVFPKCDHVAVGTGTVTH 279
>01_01_1137 + 9017211-9018584
Length = 457
Score = 31.1 bits (67), Expect = 2.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 612 DDSPVNYGYVFALCEHMGCGTWTV 683
D SP YG+VF C+H+ GT TV
Sbjct: 235 DVSPDFYGWVFPKCDHVAVGTGTV 258
>05_07_0200 - 28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 29.9 bits (64), Expect = 5.8
Identities = 20/79 (25%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Frame = +2
Query: 1265 PXXXXPXXTXXXXPSRAXXXRXXXASXXXGPXXSXRPPIHGXXXAPTPPP---TGXXXRG 1435
P + PS AS P S PPI P PPP +
Sbjct: 269 PANSSSSSSSSSAPSTPSCSSDTAASRSRLPELSKLPPIPPPPPPPPPPPMPRSRSASPS 328
Query: 1436 RXXXXSXXXXPXXPPPRRP 1492
S P PPP P
Sbjct: 329 PSTSSSGSAGPPAPPPPPP 347
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 29.9 bits (64), Expect = 5.8
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = -2
Query: 1502 PXXXGGGGGGXRAXXXXXXXGXAXXXXXRWGAEWAXXXSRGWGAXKSXXARXXW 1341
P GGGGGG R A R GAE G+ R W
Sbjct: 14 PSAGGGGGGGGRGGGWRSGSSAAKDQRLRLGAEELLESRLGFAPYTDSERRLGW 67
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.9 bits (64), Expect = 5.8
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 261 ILEDSLKSKDISSLYYAVKGLKLL-KAPIPDICEDIKTIKYDVKNIEQIFQLTNAAALTD 437
+L + L SK S L + + L LL K P+P + ++ IK + +I Q +N +T
Sbjct: 1762 LLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNANLIKNVLMDIAQRAGNSNGHLVTS 1821
Query: 438 CVNFL 452
C+ L
Sbjct: 1822 CLKLL 1826
>07_01_0080 + 587674-588510
Length = 278
Score = 25.4 bits (53), Expect(2) = 7.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 1474 PPPPPPXXXGXP 1509
PPPPPP G P
Sbjct: 93 PPPPPPPSSGSP 104
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 1468 RXPPPPPP 1491
R PPPPPP
Sbjct: 89 RRPPPPPP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,017,534
Number of Sequences: 37544
Number of extensions: 670299
Number of successful extensions: 4340
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4038
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5151335952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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