Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F08_e446_12.seq
         (1590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)         44   3e-04
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.1  

>SB_44821| Best HMM Match : Ribophorin_II (HMM E-Value=3.5e-15)
          Length = 512

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
 Frame = +3

Query: 204 AISNANILAGTIELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPDICEDIKTIKYD 383
           A   A++L+   E  RL+   +++   +D+ + +YA+KGLK  KAP+P      K ++ +
Sbjct: 19  AAKPASVLS-VAEQARLRQTFQEAAPFRDLETAHYALKGLKFFKAPMPPNQNVCKFVEDN 77

Query: 384 VKNIEQIFQLTNAAALTDCVNFLKPEVLSTPAQVLD--KKDATLSEIYYSVYALKALGKG 557
           V     I  + +A+++   +   +  +      + D  ++ A  S I+Y+V +L  L  G
Sbjct: 78  VDR-SSILSVYHASSIIKVLGNCQLNLKDAEQMLADSIQEGAPTSTIFYAVSSLSNL--G 134

Query: 558 SVFDKEDALKNLIQLLKKDDSPVNYGYVFAL 650
              D    LK +      D+  V+   +FA+
Sbjct: 135 LKIDSAAVLKAVRAASSSDEDSVS-SAIFAM 164


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 32.3 bits (70), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 801 FVCSNNRGE*QGSDWQGHLRNEVT 730
           F C+NN+G  QG DW  H  N+ T
Sbjct: 256 FTCTNNKGTGQGKDWFTHTNNKGT 279



 Score = 30.7 bits (66), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 801 FVCSNNRGE*QGSDWQGHLRNEVT 730
           F C+NN+G  QG +W  H  N+ T
Sbjct: 301 FTCTNNKGTGQGKEWFTHTNNKGT 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,281,393
Number of Sequences: 59808
Number of extensions: 657835
Number of successful extensions: 2023
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1949
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5211572988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)