Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F08_e446_12.seq
(1590 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 32 1.3
AC024880-3|AAF60915.3| 675|Caenorhabditis elegans Hypothetical ... 31 1.7
AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical ... 31 2.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 5.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 5.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 5.2
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 25 7.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 25 7.6
AF022978-9|AAG24185.1| 353|Caenorhabditis elegans Seven tm rece... 29 9.1
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical protein
T28C6.1 protein.
Length = 281
Score = 31.9 bits (69), Expect = 1.3
Identities = 13/48 (27%), Positives = 17/48 (35%)
Frame = -2
Query: 1508 GXPXXXGGGGGGXRAXXXXXXXGXAXXXXXRWGAEWAXXXSRGWGAXK 1365
G GGG GG R G + WG + + GWG +
Sbjct: 62 GSGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQ 109
>AC024880-3|AAF60915.3| 675|Caenorhabditis elegans Hypothetical
protein Y97E10AR.1 protein.
Length = 675
Score = 31.5 bits (68), Expect = 1.7
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +3
Query: 480 QVLDKKDATLSEIYYSVYALKALGKGSVFDKEDALKNLIQLLKKDDSPVNYGYVFALCE 656
+VL K+ S+I+ Y + + FDK +A +L++ L +D NY VF + E
Sbjct: 528 EVLRKQSRVFSKIFEQTY--EPITIPLTFDKFEAFSSLLEFLHGEDIYFNYNNVFKIIE 584
>AL117204-9|CAB55124.1| 358|Caenorhabditis elegans Hypothetical
protein Y116A8C.18 protein.
Length = 358
Score = 31.1 bits (67), Expect = 2.3
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 240 ELKRLQSILEDSLKSKDISSLYYAVKGLKLLKAPIPD-ICEDIKTIK 377
+LK LQS LE +L+ +++ L+ V+ +LLK+ + + + E IK++K
Sbjct: 188 QLKDLQSKLERNLELVELNKLHEEVQSERLLKSEVAEKLAELIKSVK 234
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +2
Query: 1355 PXXSXRPPIHGXXXAPTPPPTGXXXRGRXXXXSXXXXPXXPPPRRPXXGXPP 1510
P PP+ G P PP G R S P PP P G PP
Sbjct: 241 PPPKGSPPLAGSGSPPPPPAAGSPPPPR--TGSPPPPPTGSPPPPPAGGSPP 290
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +2
Query: 1355 PXXSXRPPIHGXXXAPTPPPTGXXXRGRXXXXSXXXXPXXPPPRRPXXGXPP 1510
P PP+ G P PP G R S P PP P G PP
Sbjct: 262 PPPKGSPPLAGSGSPPPPPAAGSPPPPR--TGSPPPPPTGSPPPPPAGGSPP 311
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 5.2
Identities = 17/52 (32%), Positives = 18/52 (34%)
Frame = +2
Query: 1355 PXXSXRPPIHGXXXAPTPPPTGXXXRGRXXXXSXXXXPXXPPPRRPXXGXPP 1510
P PP+ G P PP G R S P PP P G PP
Sbjct: 247 PPPKGSPPLAGSGSPPPPPAAGSPPPPR--TGSPPPPPTGSPPPPPAGGSPP 296
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 25.4 bits (53), Expect(2) = 7.5
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 1474 PPPPPPXXXGXP 1509
PPPPPP G P
Sbjct: 652 PPPPPPSGAGGP 663
Score = 22.2 bits (45), Expect(2) = 7.5
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +1
Query: 1441 PXXFXXXXARXPPPPPP 1491
P A PPPPPP
Sbjct: 638 PMGLPAVGAGAPPPPPP 654
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 25.4 bits (53), Expect(2) = 7.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 1474 PPPPPPXXXGXP 1509
PPPPPP G P
Sbjct: 478 PPPPPPSGAGGP 489
Score = 22.2 bits (45), Expect(2) = 7.6
Identities = 8/17 (47%), Positives = 8/17 (47%)
Frame = +1
Query: 1441 PXXFXXXXARXPPPPPP 1491
P A PPPPPP
Sbjct: 464 PMGLPAVGAGAPPPPPP 480
>AF022978-9|AAG24185.1| 353|Caenorhabditis elegans Seven tm
receptor protein 256 protein.
Length = 353
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 53 GCRXFGTRXRPVYDIFRNFCIFLNPKLKSFKAYK 154
GC F ++ I+R F I NP LKSF ++K
Sbjct: 95 GCFGFSIAILALHFIYRFFSITNNPHLKSFDSWK 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,661,164
Number of Sequences: 27780
Number of extensions: 524383
Number of successful extensions: 1932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1771
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4608230712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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