Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F08_e446_12.seq
         (1590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   5.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   9.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1474 PPPPPPXXXG 1503
            PPPPPP   G
Sbjct: 343  PPPPPPSSSG 352


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 552 SLELLKHKQNNIFLTVLHLFYQ 487
           ++ LLK++      T LHL YQ
Sbjct: 35  NVNLLKNRTGRYMFTYLHLLYQ 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1474 PPPPPPXXXG 1503
            PPPPPP   G
Sbjct: 1356 PPPPPPPSSG 1365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 336,311
Number of Sequences: 438
Number of extensions: 6839
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 55984500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)