Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F07_e438_11.seq
         (1597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...   210   5e-55
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po...    28   3.1  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    28   4.1  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    27   5.5  
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p...    27   9.5  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   9.5  

>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score =  210 bits (512), Expect = 5e-55
 Identities = 110/223 (49%), Positives = 151/223 (67%), Gaps = 5/223 (2%)
 Frame = +1

Query: 88  IEKSFLRLTKAPEACEVRPVMVLRNSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIR 267
           +EK +LRLT AP+   VRP+ VL+ +L+ +K++W E ++Y Y CDQ KS+RQDLTVQ I+
Sbjct: 139 LEKRYLRLTSAPDPDTVRPLPVLKQTLELLKKKWKEEKNYAYICDQFKSLRQDLTVQRIQ 198

Query: 268 DSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLYS-ELPDSRSNSAEFTAYRILYYIFT 444
           + F+V VYE HARIALEKGD  E+NQCQTQL  LYS  +P    N+ EF AYRILY +FT
Sbjct: 199 NEFSVLVYEIHARIALEKGDVGEYNQCQTQLFHLYSFGIP---GNTKEFLAYRILYMLFT 255

Query: 445 KNTLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAPLMAGYLMDWFV 624
           KN  ++ ++   +   D+ N  + HAL+ R A ATG+ +KFF LY  AP M GYLMD F+
Sbjct: 256 KNRSEMNSLLANLKEEDKTNAAVTHALEVRSAMATGDYYKFFHLYLVAPNMGGYLMDLFI 315

Query: 625 ERERKQYLKYIIKSY----VLKFLINF*TFKLLLQVTLNFDRT 741
           ERER Q +  + K+Y     ++FL N   F+  ++  +NF R+
Sbjct: 316 ERERVQAMIMMCKAYRPSLTMEFLANTLAFE-EMEDCVNFFRS 357


>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 452

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 280 VEVYETHARIALEKGDHEEFNQCQTQLKMLYSEL 381
           ++VYE   R  LEKG+ EE  +    +  LY  L
Sbjct: 371 IKVYEVLVRKTLEKGNEEEIYEANKCMDALYDAL 404


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 417 IQNIVLYIYKKYFRFNNYISIYF 485
           I N+     + YFR+ NYIS+YF
Sbjct: 76  IVNVEFSNVQSYFRYYNYISLYF 98


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 782 CGIFDKTMVFRWYW 741
           CGIF K+M F W W
Sbjct: 241 CGIFPKSMNFEWKW 254


>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 238 RQDLTVQGIRDSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLY 372
           R+D T + I  +   +V  +     L+  +HEE ++C  +++ LY
Sbjct: 128 REDGTDEDINSNSVNDVSLSSGETMLQFPEHEEQHECNREMEQLY 172


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 567 KFVQISSCPSTPCL 526
           KF++I S PSTPCL
Sbjct: 346 KFLKIDSTPSTPCL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,608,426
Number of Sequences: 5004
Number of extensions: 82127
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 901889170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)