Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F07_e438_11.seq
         (1597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819...   166   5e-41
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423...    98   1e-20
02_04_0230 + 21103524-21103746,21105393-21105661,21105845-211060...    30   4.4  
06_03_1061 + 27282979-27286854                                         30   5.9  
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670...    29   7.8  

>05_05_0127 - 22580720-22580808,22580936-22580987,22581703-22581908,
            22582019-22582152,22582239-22582369,22583333-22583392,
            22583615-22583755,22583880-22584347,22584524-22584686,
            22585373-22585476,22585755-22585853,22586177-22586281,
            22586516-22586596,22587168-22587986,22588497-22588553
          Length = 902

 Score =  166 bits (403), Expect = 5e-41
 Identities = 91/195 (46%), Positives = 125/195 (64%), Gaps = 1/195 (0%)
 Frame = +1

Query: 88   IEKSFLRLTKAPEACEVRPVMVLRNSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIR 267
            IEK +LRLT AP+   VRP  VL  +L  V+     +++Y Y CDQLKSIRQDLTVQ I+
Sbjct: 617  IEKRYLRLTSAPDPATVRPEHVLEKALSMVET---SQKNYLYKCDQLKSIRQDLTVQRIQ 673

Query: 268  DSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLYSELPDSRSNSAEFTAYRIL-YYIFT 444
            +  TV+VYETHAR+A++ GD  E+NQCQ+QLK LY+E    +    EF+AY +L   + +
Sbjct: 674  NELTVKVYETHARLAMQAGDLPEYNQCQSQLKRLYAE--GIKGCYFEFSAYNLLCVMLHS 731

Query: 445  KNTLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAPLMAGYLMDWFV 624
             N  DL +    +S   +++E +KHAL    A ++GN   FF LYK AP +   LMD +V
Sbjct: 732  NNKRDLLSSLARLSKQAKQDEAVKHALAVHSAVSSGNYVLFFKLYKQAPNLNSCLMDLYV 791

Query: 625  ERERKQYLKYIIKSY 669
            ER R + +K + KSY
Sbjct: 792  ERMRFEAVKCMSKSY 806


>01_06_1263 +
           35840502-35841308,35841763-35841969,35842272-35842370,
           35843361-35843464,35844521-35844698,35844774-35845244,
           35845383-35845523,35846290-35846349,35846427-35846490,
           35847295-35847524,35847606-35847704
          Length = 819

 Score = 98.3 bits (234), Expect = 1e-20
 Identities = 56/111 (50%), Positives = 71/111 (63%)
 Frame = +1

Query: 88  IEKSFLRLTKAPEACEVRPVMVLRNSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIR 267
           IEK +LRLT AP+   VRP  VL  +L  V+     +++Y Y CDQLKSIRQDLTVQ I+
Sbjct: 607 IEKRYLRLTSAPDPATVRPEDVLEKALHMVET---SQKNYLYKCDQLKSIRQDLTVQRIQ 663

Query: 268 DSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLYSELPDSRSNSAEFTAY 420
           +  TV VYETHAR+AL+ GD  EFNQ     ++L + L  +RS   E   Y
Sbjct: 664 NELTVMVYETHARLALQSGDLPEFNQFH-YARLLTALLEITRSQRFEPNLY 713


>02_04_0230 +
           21103524-21103746,21105393-21105661,21105845-21106009,
           21106081-21106203,21107261-21107473
          Length = 330

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 23/95 (24%), Positives = 43/95 (45%)
 Frame = +1

Query: 109 LTKAPEACEVRPVMVLRNSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIRDSFTVEV 288
           L K  E C+ R  +VL +++   K+RW++ +      D + S+  +   +   D     +
Sbjct: 163 LQKTVELCKNR--VVLFDNM--TKDRWLQEKQLENLLDVVDSVNTNNGGKPFSDQMLACI 218

Query: 289 YETHARIALEKGDHEEFNQCQTQLKMLYSELPDSR 393
            E HAR   E+  H+     + Q+  L  E+  +R
Sbjct: 219 KEAHAR---EQEVHDAIGYTEEQISELKKEIQRTR 250


>06_03_1061 + 27282979-27286854
          Length = 1291

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -3

Query: 338 NSSWSPFSKAIRAWVSYTSTVKLSRIPCTVK 246
           +S WSP S+ +    ++ ST++L  +PCT +
Sbjct: 617 SSIWSPGSEVVFVQSNWPSTIRLLSLPCTFR 647


>07_03_0151 -
           14465479-14465675,14466280-14466401,14466934-14467081,
           14467146-14467167,14467299-14467393,14467395-14467438,
           14467750-14467841,14467911-14467982,14468188-14468229,
           14468333-14468494,14468631-14468683,14468808-14468925,
           14468974-14469150,14469573-14469639,14470195-14470273,
           14473805-14473862,14474257-14474346,14474429-14474540,
           14474649-14474912,14475361-14475463,14476200-14476278,
           14476748-14476852
          Length = 766

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 5/134 (3%)
 Frame = +1

Query: 283 EVYETHARIALEKGDHEEFNQCQTQLKMLYSE----LPDSRSNSAEFTAYRILYYIFTKN 450
           ++YE    ++++  D + F +   QLK  Y +    +P S           +L  +    
Sbjct: 63  DIYEHAVVLSVKIEDQDAFERDFCQLKPYYMDTCGIIPPS-PQEYPILGLNLLRLLVQNR 121

Query: 451 TLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAPLMA-GYLMDWFVE 627
             +  T  + +     EN CIKHA++   ++  G  ++     ++ P     Y MD   +
Sbjct: 122 IAEFHTELELLPVTALENPCIKHAVELEQSFMEGAYNRVLSARQAVPHETYVYFMDLLAK 181

Query: 628 RERKQYLKYIIKSY 669
             R +      K Y
Sbjct: 182 TVRDELAGCSEKGY 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,581,009
Number of Sequences: 37544
Number of extensions: 511805
Number of successful extensions: 953
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5174540168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)