Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F07_e438_11.seq
         (1597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)             83   5e-16
SB_15853| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.5  

>SB_12780| Best HMM Match : SAC3_GANP (HMM E-Value=3.7e-07)
          Length = 436

 Score = 83.4 bits (197), Expect = 5e-16
 Identities = 37/42 (88%), Positives = 39/42 (92%)
 Frame = +1

Query: 250 TVQGIRDSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLYS 375
           TVQGIRD FTVEVYETHAR+ALEKGD EEFNQCQTQLK LY+
Sbjct: 286 TVQGIRDEFTVEVYETHARVALEKGDREEFNQCQTQLKALYA 327


>SB_15853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 20/43 (46%), Positives = 23/43 (53%)
 Frame = -1

Query: 130 MPQELLLILKRIFLYAKPRAEXPAXPGXXH*XLERPPPRGSXS 2
           +P+ L L L  IFL A  R   P  PG     LERPPPR S +
Sbjct: 6   LPRALSLPLLSIFL-ASSRKSPPRSPGDPL-VLERPPPRWSSN 46


>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = -3

Query: 824 YNLCKQKRQPVLIXCGIFDKTMVFRWYW--VLSKFNVTCKSSLKV*KFIKNLRTYDFMMY 651
           Y L  + R   +  C I  K  VFR +     + FN+   S +K       L+T + +  
Sbjct: 117 YELHMEWRDTKVFDCAIIQKAFVFRGFRTPTANAFNILVTSIIKHTALFHILKTLEIVSN 176

Query: 650 LRYCFRSRSTNQSIRYPAI 594
           + +   S   ++  RYP +
Sbjct: 177 IAFSANSMYLSEQDRYPLL 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,422,340
Number of Sequences: 59808
Number of extensions: 586467
Number of successful extensions: 2507
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2504
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5235048542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)