Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F07_e438_11.seq
         (1597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ...   165   7e-41
At1g64520.1 68414.m07314 26S proteasome regulatory subunit, puta...    37   0.043
At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam ...    35   0.17 
At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam ...    35   0.17 
At5g43990.2 68418.m05382 SET domain-containing protein identical...    29   6.5  
At5g43990.1 68418.m05383 SET domain-containing protein identical...    29   6.5  
At5g42040.1 68418.m05118 26S proteasome non-ATPase regulatory su...    29   8.5  
At4g33355.1 68417.m04742 protease inhibitor/seed storage/lipid t...    29   8.5  

>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
            profile: PF03399 SAC3/GANP family
          Length = 1006

 Score =  165 bits (401), Expect = 7e-41
 Identities = 89/194 (45%), Positives = 124/194 (63%), Gaps = 1/194 (0%)
 Frame = +1

Query: 88   IEKSFLRLTKAPEACEVRPVMVLRNSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIR 267
            IEK +LRLT AP+   VRP  VL  +L  V++    +++Y + CDQLKSIRQDLTVQ I 
Sbjct: 728  IEKRYLRLTSAPDPATVRPEDVLEKALIMVQD---SQKNYLFKCDQLKSIRQDLTVQRIH 784

Query: 268  DSFTVEVYETHARIALEKGDHEEFNQCQTQLKMLYSELPDSRSNSAEFTAYRILYY-IFT 444
            +  T +VYETHAR+ALE GD  E+NQC +QLK LY+E       S EF AY +LY  + +
Sbjct: 785  NHLTAKVYETHARLALEAGDLPEYNQCLSQLKTLYAE--GVEGCSLEFAAYSLLYITLHS 842

Query: 445  KNTLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAPLMAGYLMDWFV 624
             N  +L +    +S  D+++E ++HAL  R A  +GN   FF LYK+AP M   LMD +V
Sbjct: 843  NNNRELLSSMSRLSEEDKKDEAVRHALSVRAAVTSGNYVMFFRLYKTAPNMNSCLMDLYV 902

Query: 625  ERERKQYLKYIIKS 666
            E+ R + + ++ +S
Sbjct: 903  EKMRYKAVNFMSRS 916


>At1g64520.1 68414.m07314 26S proteasome regulatory subunit,
           putative (RPN12) similar to 26S proteasome regulatory
           complex subunit p30 GB:AAF08395 GI:6434966 from
           [Drosophila melanogaster]
          Length = 267

 Score = 36.7 bits (81), Expect = 0.043
 Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
 Frame = +1

Query: 283 EVYETHARIALEKGDHEEFNQCQTQLKMLY----SELPDSRSNSAEFTAYRILYYIFTKN 450
           ++YE    ++++  D + F +   QLK  Y    + +P S   +       +L  +    
Sbjct: 63  DIYEHAVVLSVKTEDQDAFERDFFQLKPYYVDARNRIPQSPQENL-ILGLNLLRLLVQNR 121

Query: 451 TLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAP-LMAGYLMDWFVE 627
             +  T  + +S+A  E+ CIKHA++   ++  G  ++     ++AP     Y MD   +
Sbjct: 122 IAEFHTELELLSSATLEDPCIKHAVELEQSFMEGAYNRVLSARQTAPDATYVYFMDLLAK 181

Query: 628 RERKQYLKYIIKSY 669
             R +      K+Y
Sbjct: 182 TIRDEIAGCSEKAY 195


>At3g54380.2 68416.m06010 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 383

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = +1

Query: 94  KSFLRLTKAPE--ACEVRPVMVLRNSLKNVKERWIERQD-----YRYACDQLKSIRQDLT 252
           K F R   A +  A +VRP+ VL  +L+ +      ++      + +  D+ +SIRQDL+
Sbjct: 112 KKFCRTLSAADVQASDVRPLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLS 171

Query: 253 VQGIRDSFTVEVYETHARIALEKGDHEEFNQC 348
           +Q + +   + +YE   +  +    HE    C
Sbjct: 172 IQNLANERVIYLYEEMVKFHVI--SHERLQSC 201


>At3g54380.1 68416.m06009 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 406

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
 Frame = +1

Query: 94  KSFLRLTKAPE--ACEVRPVMVLRNSLKNVKERWIERQD-----YRYACDQLKSIRQDLT 252
           K F R   A +  A +VRP+ VL  +L+ +      ++      + +  D+ +SIRQDL+
Sbjct: 112 KKFCRTLSAADVQASDVRPLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLS 171

Query: 253 VQGIRDSFTVEVYETHARIALEKGDHEEFNQC 348
           +Q + +   + +YE   +  +    HE    C
Sbjct: 172 IQNLANERVIYLYEEMVKFHVI--SHERLQSC 201


>At5g43990.2 68418.m05382 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 740

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 85  HIEKSFLRL-TKAPEACEVRPVMVLRNSLKNVKERW--IERQDYRYACDQLKSIRQDLTV 255
           HI+K+F+ +     E   V+PV  L+N L   ++ W  I   +YR   D +    +D  +
Sbjct: 29  HIKKAFMAMRAMGIEDARVKPV--LKNLLALYEKNWELIAEDNYRVLADAIFDSHEDQAI 86

Query: 256 QGIRDSFTVEVYE 294
           Q   +    EV E
Sbjct: 87  QESEEKKADEVKE 99


>At5g43990.1 68418.m05383 SET domain-containing protein identical to
           SET domain protein SUVR2 [Arabidopsis thaliana]
           GI:15290521; contains Pfam profiles PF00856: SET domain,
           PF05033: Pre-SET motif; identical to cDNA SET domain
           protein SUVR2 GI:15290520
          Length = 717

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 85  HIEKSFLRL-TKAPEACEVRPVMVLRNSLKNVKERW--IERQDYRYACDQLKSIRQDLTV 255
           HI+K+F+ +     E   V+PV  L+N L   ++ W  I   +YR   D +    +D  +
Sbjct: 6   HIKKAFMAMRAMGIEDARVKPV--LKNLLALYEKNWELIAEDNYRVLADAIFDSHEDQAI 63

Query: 256 QGIRDSFTVEVYE 294
           Q   +    EV E
Sbjct: 64  QESEEKKADEVKE 76


>At5g42040.1 68418.m05118 26S proteasome non-ATPase regulatory
           subunit, putative similar to Swiss-Prot:P48556 26S
           proteasome non-ATPase regulatory subunit 8 (26S
           proteasome regulatory subunit S14) (p31) [Homo sapiens]
          Length = 159

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +1

Query: 424 ILYYIFTKNTLDLTTIFQFISNADRENECIKHALQTRCAWATGNLHKFFILYKSAP-LMA 600
           +L  +      +  T    +S+A  EN CIKHA++   ++  G  ++     ++AP    
Sbjct: 5   LLRLLVQNRIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGAYNRVLSARQTAPDETY 64

Query: 601 GYLMDWFVERERKQYLKYIIKSY 669
            Y MD   +  R +      K+Y
Sbjct: 65  VYFMDLLAKTIRDEIAGCSEKAY 87


>At4g33355.1 68417.m04742 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           profile: PF00234 protease inhibitor/seed storage/LTP
           family
          Length = 109

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 160 NSLKNVKERWIERQDYRYACDQLKSIRQDLTVQGIRDSFTVEV 288
           N L ++K    E+ D + AC+ LKS+    T+ GI D F  ++
Sbjct: 47  NGLNSLKAAAPEKADRQVACNCLKSVAN--TIPGINDDFAKQL 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,304,015
Number of Sequences: 28952
Number of extensions: 426388
Number of successful extensions: 874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4308450624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)