Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F06_e430_12.seq
         (1598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   192   9e-49
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   174   2e-43
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     75   2e-13
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     30   4.4  
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    30   5.9  
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    29   7.8  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    29   7.8  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  192 bits (467), Expect = 9e-49
 Identities = 93/185 (50%), Positives = 138/185 (74%), Gaps = 2/185 (1%)
 Frame = +2

Query: 95  KILKAGAIEPDTFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 268
           KI K   +EP  FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP
Sbjct: 7   KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66

Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
               KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT+V
Sbjct: 67  YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122

Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
           +D ILED+V+PAEIVGKRIR +LDG+++IK+ LD  ++   E+K++TF +VY++L G++V
Sbjct: 123 HDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDV 182

Query: 629 TFEFP 643
            FE+P
Sbjct: 183 AFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  174 bits (423), Expect = 2e-43
 Identities = 86/167 (51%), Positives = 123/167 (73%), Gaps = 2/167 (1%)
 Frame = +2

Query: 149 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 322
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 323 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 502
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D ILED+V+PAEIVGKR
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKR 153

Query: 503 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 643
           +R  LDG +++K+ LD  ++   E+K+DTF SVY++L G++V F++P
Sbjct: 154 VRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 74.9 bits (176), Expect = 2e-13
 Identities = 42/98 (42%), Positives = 63/98 (64%)
 Frame = +2

Query: 203 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 382
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 383 PSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 496
           P +K    +    PR+RTL +V+D ILED+V    ++G
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 417 FCLLATRVLWLGLGRILRSPTNTTCLPLNFFSNSRTSLI 301
           F L A+  L L L  +L   T+  CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 473 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 580
           +FPA I G  +  KLD ++L K H D+ +   ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623


>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +2

Query: 422 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 538
           P +RTLT+ +D IL+D +  A+I GK +    + + +IK
Sbjct: 86  PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 29.5 bits (63), Expect = 7.8
 Identities = 25/78 (32%), Positives = 38/78 (48%)
 Frame = -3

Query: 609 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 430
           FL +D     +CS +   F+  C L   E   F L+   TI+      + MA+ T  +  
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516

Query: 429 ERGLFCLLATRVLWLGLG 376
             GL+ +LA R+LWL +G
Sbjct: 517 --GLYTVLAPRILWLAIG 532


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,239,335
Number of Sequences: 37544
Number of extensions: 660713
Number of successful extensions: 1441
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5186142276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)