Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F06_e430_12.seq
         (1598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    27   0.34 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   9.7  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 0.34
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 125 DTFETSISQALVELETNSDLKAQLRE 202
           +T  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 437 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 607
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = +2

Query: 437 LTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYK 607
           L S Y+ ++  +V  ++++  R+ +KL  SQLI V+L KNQ  T    V+     YK
Sbjct: 36  LLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNL-KNQIMTTNLWVEQSWYDYK 89


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 7.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 116 IEPDTFETSISQALVELETNSDLKAQLRELYITKAKE 226
           + P+TF   ++   V++  N     +L  L +TK  E
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIETMELTSLLLTKVAE 668


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 870 RRGPXRSPFPTVCAA*MANGKXEA 941
           RR   + P PT C     NG+ EA
Sbjct: 28  RRKKNKKPLPTECVFCRNNGEEEA 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 341,069
Number of Sequences: 438
Number of extensions: 7301
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 56343375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)