Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F06_e430_12.seq
(1598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 190 2e-48
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 190 2e-48
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 187 2e-47
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 182 6e-46
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 182 6e-46
At4g28430.1 68417.m04069 reticulon family protein contains Pfam ... 30 3.7
At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containi... 29 6.5
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 190 bits (463), Expect = 2e-48
Identities = 93/185 (50%), Positives = 137/185 (74%), Gaps = 2/185 (1%)
Frame = +2
Query: 95 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 268
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 629 TFEFP 643
FE+P
Sbjct: 183 VFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 190 bits (463), Expect = 2e-48
Identities = 93/185 (50%), Positives = 137/185 (74%), Gaps = 2/185 (1%)
Frame = +2
Query: 95 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 268
KI K + P FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDV 182
Query: 629 TFEFP 643
FE+P
Sbjct: 183 VFEYP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 187 bits (456), Expect = 2e-47
Identities = 95/185 (51%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 95 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 268
KI K EP E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T VY+KLTG++V
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDV 182
Query: 629 TFEFP 643
FE+P
Sbjct: 183 VFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 182 bits (443), Expect = 6e-46
Identities = 90/185 (48%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 95 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 268
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 629 TFEFP 643
FEFP
Sbjct: 183 VFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 182 bits (443), Expect = 6e-46
Identities = 90/185 (48%), Positives = 134/185 (72%), Gaps = 2/185 (1%)
Frame = +2
Query: 95 KILKAGAIEPDTFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 268
KI K +E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 269 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 448
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 449 YDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 628
++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F +VYKKLTG++V
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDV 182
Query: 629 TFEFP 643
FEFP
Sbjct: 183 VFEFP 187
>At4g28430.1 68417.m04069 reticulon family protein contains Pfam
profile PF02453: Reticulon
Length = 457
Score = 30.3 bits (65), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 494 QQSRPGIPDLPIWRHIQKSVSWNGAFSVCWL 402
++ R I DL +WR + KS W G +C+L
Sbjct: 189 ERIRENISDLIMWRDVAKSTLWFGFGCICFL 219
>At3g10360.1 68416.m01242 pumilio/Puf RNA-binding domain-containing
protein similar to RNA binding protein PufA GB:AAD39751
[Dictyostelium discoideum] and similar to Pumilio
protein GB:A46221 [Drosophila sp.]
Length = 1003
Score = 29.5 bits (63), Expect = 6.5
Identities = 23/91 (25%), Positives = 39/91 (42%)
Frame = +2
Query: 23 GRSXN*WXPPGCRXFGTRXSXMSTKILKAGAIEPDTFETSISQALVELETNSDLKAQLRE 202
GRS PP GTR + K AI+ T+ A N +Q++E
Sbjct: 312 GRSTASGLPP----IGTRVGPVEKKNTFGTAIQNCESYTAADVADTLSRLNMSEMSQVKE 367
Query: 203 LYITKAKEIELHNKKSIIIYVPMPKLKAFQK 295
++ ++EL N+ ++ Y+P KA ++
Sbjct: 368 NHMQSQLQVELENQSDVMRYIPNGHKKALRQ 398
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,114,965
Number of Sequences: 28952
Number of extensions: 496337
Number of successful extensions: 1090
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4318089216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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