Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F05_e422_11.seq
(1624 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 40 7e-04
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 30 0.79
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.79
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 29 2.4
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 28 3.2
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 7.3
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 9.7
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 27 9.7
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 40.3 bits (90), Expect = 7e-04
Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Frame = +3
Query: 477 DQSREFMAVFPDIVRDLTETGKHTDVPE-ASKWLAKLLQYNVPNGKKNRGLATILAYKMV 653
D+ +F + P V ++ K ++P+ ++W L +N GK NRGL+ I +Y+++
Sbjct: 5 DKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEIL 64
Query: 654 ETKENMTPENIHLANIMGWXVEMFLRTSLC*TILLEGTEMRPG 782
+ A ++GW VE+ L +++ ++ R G
Sbjct: 65 -LGHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRG 106
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 30.3 bits (65), Expect = 0.79
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 715 THHPMMFAKCIFSGVMFSLVSTILYANMVARPRFFFPFGTLYCNNLANHLLA 560
TH + F+ IFS F+ ++ + A + P++F P+GTL N A LL+
Sbjct: 183 THRGIGFS-LIFSP--FAALTRLYLARFLNSPQYFIPYGTLCANVFATLLLS 231
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 30.3 bits (65), Expect = 0.79
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1
Query: 715 THHPMMFAKCIFSGVMFSLVSTILYANMVARPRFFFPFGTLYCNNLANHLLA 560
TH + F+ IFS F+ ++ + A + P++F P+GTL N A LL+
Sbjct: 183 THRGIGFS-LIFSP--FAALTRLYLARFLNSPQYFIPYGTLCANVFATLLLS 231
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 441 MPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHTDVPEASKWL--AKLLQYNVPNGKK 614
+P + V Q+ F+ F DIV + E GK+ P+AS+ L + L+ + N +K
Sbjct: 320 LPEVPSAMPVPNAQNESFVKSFTDIVHGVQEKGKY---PQASEILDATRFLKTDTNNEQK 376
Query: 615 NRGLATI 635
+TI
Sbjct: 377 PTNNSTI 383
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 471 SKDQSREFMAVFPDIVRDLTETGKHTDVPEASKWLAKLLQY 593
++D + ++FP+IVR++ ++D+ KW+A L +
Sbjct: 16 ARDIVKTDQSLFPEIVRNILSVANYSDI-RYKKWMANFLWF 55
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.1 bits (57), Expect = 7.3
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -3
Query: 272 FFLVNL*ELV*AFLCRKHF*NFFKYFLCKILFKKYF---VLNKFLNGF 138
F+ N+ EL+ +C K K FLC LFK + VL F GF
Sbjct: 188 FYETNMQELIRKTICEKSDKAIEKTFLCAQLFKTFCEDGVLQTFQPGF 235
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 189 TQEIFEEVSKMFSTKKSLDK-FLQIYKKEIRRQISKTTSVTNSDAMAPRLD 338
T ++ + S FST + FLQ+ K+IR + + ++ DA+ R+D
Sbjct: 611 TIKLLQPKSNSFSTSSLIQSLFLQLDNKQIRAIEASQPTYSHLDALLARID 661
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 26.6 bits (56), Expect = 9.7
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Frame = +3
Query: 465 AVSKDQSREFMAVFPDIVRDLTE--TGKHTDVPEASKWLAKLLQYNVPN--GKKNRG-LA 629
A+ + +R +A+ PD+++DLTE + K V AS+ L L + P+ +K+RG LA
Sbjct: 421 AIREVCARAPLAMTPDLLQDLTEYKSSKDKGVMMASRSLITLYREVAPDMLKRKDRGKLA 480
Query: 630 TI 635
+I
Sbjct: 481 SI 482
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,062,317
Number of Sequences: 5004
Number of extensions: 100595
Number of successful extensions: 275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 919728736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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