Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F05_e422_11.seq
(1624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 58 3e-08
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 54 3e-07
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 51 2e-06
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 45 1e-04
04_04_1557 + 34411215-34411571,34411676-34411831 31 2.6
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 31 2.6
01_07_0114 + 41161923-41163251 30 6.0
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 57.6 bits (133), Expect = 3e-08
Identities = 23/61 (37%), Positives = 39/61 (63%)
Frame = +3
Query: 558 EASKWLAKLLQYNVPNGKKNRGLATILAYKMVETKENMTPENIHLANIMGWXVEMFLRTS 737
E +W+AK++ YNVP GK NRGL+ + +Y ++ + E+ +LA ++GW VE ++
Sbjct: 95 ETRQWVAKMMDYNVPGGKLNRGLSVVDSYMLLRQGTEVDDEDFYLACVLGWCVEWLQASA 154
Query: 738 L 740
L
Sbjct: 155 L 155
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 54.0 bits (124), Expect = 3e-07
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Frame = +3
Query: 477 DQSREFMAVFPDIVRDLTETGKHTDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMVE 656
D F+ + + DL EA +WLA+++ YNVP GK NRGL+ I +Y +++
Sbjct: 53 DARERFVQAYGRLRDDLVGDDSCELTDEARRWLAQMIDYNVPGGKLNRGLSVIDSYLLLK 112
Query: 657 TKENMTPENIHLANIMGW--XVEMFLRTS 737
+T ++ LA ++G V +L TS
Sbjct: 113 QGSEVTEDDFFLACVLGCFKHVHYYLMTS 141
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 51.2 bits (117), Expect = 2e-06
Identities = 25/86 (29%), Positives = 48/86 (55%)
Frame = +3
Query: 450 ATRGLAVSKDQSREFMAVFPDIVRDLTETGKHTDVPEASKWLAKLLQYNVPNGKKNRGLA 629
A G V K++ EF ++ + +L + +W+ ++L YNVP GK NRGL+
Sbjct: 8 ACGGGGVDKEKE-EFKQIYGVLKEELLRDPAFEFTDSSRQWIDRMLDYNVPGGKCNRGLS 66
Query: 630 TILAYKMVETKENMTPENIHLANIMG 707
+ +YK+++ ++ E++ LA+ +G
Sbjct: 67 VVDSYKLLKGTNVLSQEDMFLASTLG 92
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 45.2 bits (102), Expect = 1e-04
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +3
Query: 579 KLLQYNVPNGKKNRGLATILAYKMVETKENMTPENIHLANIMGWXVEMFLRTSLC*TILL 758
K+L YNV GK NRG++ I ++KM++ + + E LA +GW +E L ++
Sbjct: 70 KMLDYNVLGGKCNRGISVIDSFKMLKGTDVLNKEETFLACTLGWCIEWLQAYFLVLDDIM 129
Query: 759 EGTEMRPG 782
+ ++ R G
Sbjct: 130 DNSQTRRG 137
>04_04_1557 + 34411215-34411571,34411676-34411831
Length = 170
Score = 31.1 bits (67), Expect = 2.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 164 VLNKFLNGFKYRLNATR*VDRLIXLLCFALVPN 66
V+ K L KYR+ R + LLC LVPN
Sbjct: 64 VIAKILRSSKYRVTTVESATRALELLCLGLVPN 96
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 31.1 bits (67), Expect = 2.6
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +3
Query: 288 SKTTSVTNSDAMAPRLDQPTIKSPQNDETGSKKLLKLQKYHRFLSTLTPQEMPMATRGL 464
S TT+ +S +AP L Q +++P+ E Q+ +T TP +P +++ +
Sbjct: 83 SSTTATASSSPLAPELRQAIMEAPRPSELAQPSPTPPQEQPVDAATTTPHHIPSSSKSI 141
>01_07_0114 + 41161923-41163251
Length = 442
Score = 29.9 bits (64), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 786 NTRVSSPYLPIISFSISWYVGTFPXTIP*CLLNVYSR 676
N R+ YLP+ S+SW V P ++P L++ +R
Sbjct: 242 NPRIPGYYLPVKGISVSWSVPETPASLPAGALDLDAR 278
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,481,646
Number of Sequences: 37544
Number of extensions: 703889
Number of successful extensions: 1488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 86
effective length of database: 11,564,564
effective search space used: 5250312056
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -