Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F05_e422_11.seq
         (1624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)    67   3e-11
SB_17094| Best HMM Match : NapE (HMM E-Value=7.7)                      30   4.5  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  29   7.9  
SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71)                  29   7.9  
SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)                       29   7.9  

>SB_1273| Best HMM Match : polyprenyl_synt (HMM E-Value=3.64338e-44)
          Length = 303

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
 Frame = +3

Query: 468 VSKDQSREFMAVFPDIVRDLTETGKHT-DVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
           ++ D  + F   FP  V DL +  ++   + ++ KWL ++L+YNVP GK+NRGL+ I + 
Sbjct: 13  LTSDDWKLFDDAFPGFVNDLVQEEENDLAIGDSIKWLREVLEYNVPGGKRNRGLSVIGSL 72

Query: 645 KMVETKENMTPENIHLANIMGWXVEMF 725
           + +  +E+ T E++ +A ++GW VE F
Sbjct: 73  RHLIREEHFTDEHLRVALLLGWCVEWF 99


>SB_17094| Best HMM Match : NapE (HMM E-Value=7.7)
          Length = 219

 Score = 30.3 bits (65), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 544 CLPVSVRSLTMSGKTAINSRDWSLETASPRVAIGISWGVRV 422
           CLP  ++ LTM  K+      W +  AS  +A+G+ WG  +
Sbjct: 132 CLPQKIKELTMLAKSFRFLAIWVILVAS--IAVGLFWGFHI 170


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 808 GTAMPTREHPGLISVPSNNIVQHKLVRRNISTHHPMMFAKCIFSGVM 668
           GTA+ T E   +++ P+++   H  +  + S H+  M+A  I+  V+
Sbjct: 824 GTAIATSESSTILATPASDSATHLWIGSSSSAHNLQMYALTIWRAVI 870


>SB_38515| Best HMM Match : NADH5_C (HMM E-Value=0.71)
          Length = 279

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 613 FFPFGTLYCNNLANHLLASGTSVCLPVSVRSLTMSGKTAINS 488
           FFP+ T  C NL      SG+ VCL +SV S   S    +N+
Sbjct: 239 FFPYDTYNCTNL------SGSPVCLKLSVNSSLRSKGLPLNN 274


>SB_28960| Best HMM Match : PMT (HMM E-Value=3.5)
          Length = 196

 Score = 29.5 bits (63), Expect = 7.9
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 207 EVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPT 347
           EV+  +  K +++KF +  K  +  QISKT+   N D +      P+
Sbjct: 4   EVAAFYVEKTNVEKFKKAEKPSLVSQISKTSKQINGDPLKDNSSTPS 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,245,799
Number of Sequences: 59808
Number of extensions: 797620
Number of successful extensions: 1726
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 16,821,457
effective HSP length: 86
effective length of database: 11,677,969
effective search space used: 5301797926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)