Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F05_e422_11.seq
(1624 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl ... 52 6e-06
J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein. 52 6e-06
D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein. 52 6e-06
BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate sy... 52 6e-06
AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate sy... 52 6e-06
Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate sy... 44 0.001
BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein. 39 0.045
BC113699-1|AAI13700.1| 490|Homo sapiens ribosomal L1 domain con... 31 9.0
BC112228-1|AAI12229.1| 490|Homo sapiens ribosomal L1 domain con... 31 9.0
BC107782-1|AAI07783.1| 464|Homo sapiens RSL1D1 protein protein. 31 9.0
BC019069-1|AAH19069.2| 492|Homo sapiens RSL1D1 protein protein. 31 9.0
BC016362-1|AAH16362.1| 440|Homo sapiens Unknown (protein for IM... 31 9.0
AY598331-1|AAT06742.1| 490|Homo sapiens L12 protein. 31 9.0
AY154473-1|AAN46298.1| 490|Homo sapiens cellular senescence inh... 31 9.0
AJ007398-1|CAA07491.1| 517|Homo sapiens PBK1 protein protein. 31 9.0
AF083127-1|AAF98239.1| 322|Homo sapiens unknown protein. 31 9.0
>M29863-1|AAA35820.1| 346|Homo sapiens protein ( Human farnesyl
pyrophosphate synthetase mRNA (hpt807), 3' end. ).
Length = 346
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 2 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 61
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 62 RELVEPRKQDADSLQRAWTVGWCVEL 87
>J05262-1|AAA52423.1| 353|Homo sapiens FDPS protein.
Length = 353
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 9 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 68
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 69 RELVEPRKQDADSLQRAWTVGWCVEL 94
>D14697-1|BAA03523.2| 420|Homo sapiens KIAA1293 protein.
Length = 420
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 76 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 135
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 136 RELVEPRKQDADSLQRAWTVGWCVEL 161
>BC010004-1|AAH10004.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 75 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 134
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 135 RELVEPRKQDADSLQRAWTVGWCVEL 160
>AL139410-1|CAI12715.1| 419|Homo sapiens farnesyl diphosphate
synthase (farnesyl pyrophosphate synthetase,
dimethylallyl protein.
Length = 419
Score = 52.0 bits (119), Expect = 6e-06
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR LTE H ++ +A L ++L+YN GK NRGL ++A+
Sbjct: 75 VYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAF 134
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 135 RELVEPRKQDADSLQRAWTVGWCVEL 160
>Z47055-1|CAA87327.1| 348|Homo sapiens farnesyl pyrophosphate
synthetase like-4 protein.
Length = 348
Score = 44.4 bits (100), Expect = 0.001
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 468 VSKDQSREFMAVFPDIVRDLTETGK-HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAY 644
V + ++F+ F IVR TE H ++ +A L ++L+YN GK NR L +A+
Sbjct: 4 VYAQEKQDFVQHFSQIVRVPTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRRLTVAVAF 63
Query: 645 KMVETKENMTPENIHLANIMGWXVEM 722
+ + +++ A +GW VE+
Sbjct: 64 RELVDPRKQDADSLQRAWTVGWCVEL 89
>BC050292-1|AAH50292.1| 298|Homo sapiens LOC619190 protein protein.
Length = 298
Score = 39.1 bits (87), Expect = 0.045
Identities = 15/60 (25%), Positives = 34/60 (56%)
Frame = +3
Query: 543 HTDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMVETKENMTPENIHLANIMGWXVEM 722
H + +A+ L ++L+YN GK +RGL ++A++ + + +++ A +GW ++
Sbjct: 3 HPETGDATARLKEVLEYNAIGGKYHRGLMVLVAFRELVEPRKLDADSLQWAPTVGWYAQL 62
>BC113699-1|AAI13700.1| 490|Homo sapiens ribosomal L1 domain
containing 1 protein.
Length = 490
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>BC112228-1|AAI12229.1| 490|Homo sapiens ribosomal L1 domain
containing 1 protein.
Length = 490
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>BC107782-1|AAI07783.1| 464|Homo sapiens RSL1D1 protein protein.
Length = 464
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>BC019069-1|AAH19069.2| 492|Homo sapiens RSL1D1 protein protein.
Length = 492
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 304 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 349
>BC016362-1|AAH16362.1| 440|Homo sapiens Unknown (protein for
IMAGE:4107571) protein.
Length = 440
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 301 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 346
>AY598331-1|AAT06742.1| 490|Homo sapiens L12 protein.
Length = 490
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>AY154473-1|AAN46298.1| 490|Homo sapiens cellular senescence
inhibited gene protein protein.
Length = 490
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>AJ007398-1|CAA07491.1| 517|Homo sapiens PBK1 protein protein.
Length = 517
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 302 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 347
>AF083127-1|AAF98239.1| 322|Homo sapiens unknown protein.
Length = 322
Score = 31.5 bits (68), Expect = 9.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTIKSP-----QNDETGSKK 386
+K+ R+Q KT SV + D +AP T+K P Q E G KK
Sbjct: 227 RKKKRQQARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKK 272
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,788,329
Number of Sequences: 237096
Number of extensions: 4142922
Number of successful extensions: 7735
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7731
length of database: 76,859,062
effective HSP length: 94
effective length of database: 54,572,038
effective search space used: 24339128948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -