Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030905E5_F05_e422_11.seq
(1624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58734-5|AAB52504.3| 870|Caenorhabditis elegans Hypothetical pr... 36 0.081
Z68105-1|CAA92122.2| 195|Caenorhabditis elegans Hypothetical pr... 33 0.43
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 32 1.0
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 32 1.0
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 32 1.0
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 30 4.0
Z83233-6|CAB05763.1| 355|Caenorhabditis elegans Hypothetical pr... 30 5.4
Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical pr... 30 5.4
Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical pr... 30 5.4
AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical ... 29 9.4
>U58734-5|AAB52504.3| 870|Caenorhabditis elegans Hypothetical
protein T27A10.6 protein.
Length = 870
Score = 35.9 bits (79), Expect = 0.081
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +3
Query: 186 FTQEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIKSPQN 365
F+Q++ E++ K + +S K QI+++ + + + AP+ P + PQN
Sbjct: 340 FSQQLVEDIVKKIGSAQSEQKAAQIFQQSLNKLLQNANEKPIEAVSAPKAGPPAARPPQN 399
Query: 366 -DETG--SKKLLKLQKYHRFLSTLTP 434
D+ +++ + HRF L P
Sbjct: 400 LDDVNFENEQFPQPSGKHRFSKELLP 425
>Z68105-1|CAA92122.2| 195|Caenorhabditis elegans Hypothetical
protein F13E6.1 protein.
Length = 195
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 264 KKEIRRQISKTTSVTNSDAMAPRLDQPTI--KSPQNDETGSKKLLKLQKYHRFLST 425
KKE + +K ++SD A ++QPT+ K PQND + S K++ Q L T
Sbjct: 11 KKEELEKFAKELQGSDSDEDAVVIEQPTVEPKLPQNDSSSSNKIVLSQAEKDLLRT 66
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 189 TQEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIKSPQND 368
TQE E V+ M S K+S ++ L+++KK + +Q+ T + + L + + +
Sbjct: 472 TQEALEWVTAMASKKESKERKLELFKKAVLKQVKVTLENISGYGVDNHLCALFCLARERE 531
Query: 369 ETGSKKLLKLQKYHRFLSTLTPQEM--PMATRGLAVSKDQSREFMAVFPDIVRD 524
ET + + L FL L + M P++T + S D ++ + +VRD
Sbjct: 532 ETTGEDIPSL-----FLDPLWSEVMRFPLSTSQVTTSLDIPDCYL-TYGAVVRD 579
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 189 TQEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIKSPQND 368
TQE E V+ M S K+S ++ L+++KK + +Q+ T + + L + + +
Sbjct: 472 TQEALEWVTAMASKKESKERKLELFKKAVLKQVKVTLENISGYGVDNHLCALFCLARERE 531
Query: 369 ETGSKKLLKLQKYHRFLSTLTPQEM--PMATRGLAVSKDQSREFMAVFPDIVRD 524
ET + + L FL L + M P++T + S D ++ + +VRD
Sbjct: 532 ETTGEDIPSL-----FLDPLWSEVMRFPLSTSQVTTSLDIPDCYL-TYGAVVRD 579
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 32.3 bits (70), Expect = 1.0
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Frame = +3
Query: 189 TQEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIKSPQND 368
TQE E V+ M S K+S ++ L+++KK + +Q+ T + + L + + +
Sbjct: 472 TQEALEWVTAMASKKESKERKLELFKKAVLKQVKVTLENISGYGVDNHLCALFCLARERE 531
Query: 369 ETGSKKLLKLQKYHRFLSTLTPQEM--PMATRGLAVSKDQSREFMAVFPDIVRD 524
ET + + L FL L + M P++T + S D ++ + +VRD
Sbjct: 532 ETTGEDIPSL-----FLDPLWSEVMRFPLSTSQVTTSLDIPDCYL-TYGAVVRD 579
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 30.3 bits (65), Expect = 4.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 621 HDSFSHSVHCIVTTWPTT 568
HD FSH HC++ TW T
Sbjct: 116 HDIFSHLRHCLIRTWSQT 133
>Z83233-6|CAB05763.1| 355|Caenorhabditis elegans Hypothetical
protein K06B4.6 protein.
Length = 355
Score = 29.9 bits (64), Expect = 5.4
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 124 FRRYLKPFKN-LFNTKYFLNKILHKKYLKKFQKCFLQR 234
FRR + FKN LFN KYF N +H K K + C Q+
Sbjct: 42 FRRTV--FKNMLFNCKYFKNCTIHYKTHPKCRACRFQK 77
>Z81466-6|CAB03870.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 192 QEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIK 353
+++ EE + T K+ K QI++KE++ + K +N P P +K
Sbjct: 337 RKLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVK 390
>Z75536-5|CAA99833.1| 545|Caenorhabditis elegans Hypothetical
protein F18C12.3 protein.
Length = 545
Score = 29.9 bits (64), Expect = 5.4
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 192 QEIFEEVSKMFSTKKSLDKFLQIYKKEIRRQISKTTSVTNSDAMAPRLDQPTIK 353
+++ EE + T K+ K QI++KE++ + K +N P P +K
Sbjct: 337 RKLVEEEDEEVETVKNQKKMKQIFEKELKSKEVKNPKKSNKSTKKPTKSAPIVK 390
>AC024857-3|AAK31568.6| 611|Caenorhabditis elegans Hypothetical
protein Y71G12A.2 protein.
Length = 611
Score = 29.1 bits (62), Expect = 9.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 495 MAVFPDIVRDLTETGKHTDVPEASKWLAKLLQYNV 599
M++F D+ + L E + PE+ KWLA+LL +
Sbjct: 235 MSIFDDLEKLLHEFVLRSGEPESPKWLAQLLNTKI 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,920,480
Number of Sequences: 27780
Number of extensions: 611649
Number of successful extensions: 1562
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4722398590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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