Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030905E5_F05_e422_11.seq
         (1624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP...    57   3e-08
At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1, mi...    54   2e-07
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    35   0.17 
At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,...    33   0.40 
At5g60320.1 68418.m07560 lectin protein kinase family protein co...    31   2.1  
At1g76720.1 68414.m08929 eukaryotic translation initiation facto...    31   2.1  
At3g52525.1 68416.m05776 ovate protein, putative 83% similar to ...    30   3.7  
At5g03900.2 68418.m00368 expressed protein predicted protein, Sy...    29   6.6  
At5g03900.1 68418.m00367 expressed protein predicted protein, Sy...    29   6.6  
At1g27390.1 68414.m03339 mitochondrial import receptor subunit T...    29   6.6  
At4g17785.1 68417.m02654 myb family transcription factor (MYB39)...    29   8.7  

>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 342

 Score = 57.2 bits (132), Expect = 3e-08
 Identities = 25/81 (30%), Positives = 46/81 (56%)
 Frame = +3

Query: 477 DQSREFMAVFPDIVRDLTETGKHTDVPEASKWLAKLLQYNVPNGKKNRGLATILAYKMVE 656
           D    F+ V+  +  DL +        E+ +WL ++L YNV  GK NRGL+ + +YK+++
Sbjct: 3   DLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERMLDYNVRGGKLNRGLSVVDSYKLLK 62

Query: 657 TKENMTPENIHLANIMGWXVE 719
             +++T +   L+  +GW +E
Sbjct: 63  QGQDLTEKETFLSCALGWCIE 83


>At5g47770.1 68418.m05901 farnesyl pyrophosphate synthetase 1,
           mitochondrial (FPS1) / FPP synthetase 1 / farnesyl
           diphosphate synthase 1 identical to SP|Q09152 Farnesyl
           pyrophosphate synthetase 1, mitochondrial precursor (FPP
           synthetase 1) (FPS 1) (Farnesyl diphosphate synthetase
           1) [Includes: Dimethylallyltransferase (EC 2.5.1.1);
           Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis
           thaliana}
          Length = 384

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 26/108 (24%), Positives = 53/108 (49%)
 Frame = +3

Query: 396 LQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHTDVPEASKWL 575
           +  +H  L +L         +  ++  D    F+ V+  +  DL          E+  W+
Sbjct: 18  IPSHHLHLRSLGGSLYRRRIQSSSMETDLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWV 77

Query: 576 AKLLQYNVPNGKKNRGLATILAYKMVETKENMTPENIHLANIMGWXVE 719
            ++L YNV  GK NRGL+ + ++K+++   ++T + + L+  +GW +E
Sbjct: 78  DRMLDYNVRGGKLNRGLSVVDSFKLLKQGNDLTEQEVFLSCALGWCIE 125


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
            domain-containing protein contains Pfam profiles PF00612:
            IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
            regulator Bcl-2 protein) domain
          Length = 1043

 Score = 34.7 bits (76), Expect = 0.17
 Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192  QEIFEEVSKMFSTKKSLDKFLQIYKK-EIRRQISKTTSVTNSDAM 323
            +E  E +SK+ S  KSL+K L   KK +IRR+ SK  SV+ +DA+
Sbjct: 998  REQLEVISKLTSRVKSLEKKLSHKKKTQIRRRASKPMSVSPTDAV 1042


>At5g12980.1 68418.m01488 rcd1-like cell differentiation protein,
           putative similar to protein involved in sexual
           development [Schizosaccharomyces pombe] GI:1620896;
           contains Pfam profile PF04078: Cell differentiation
           family, Rcd1-like
          Length = 311

 Score = 33.5 bits (73), Expect = 0.40
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +3

Query: 507 PDIVRDLTETGKHTDVPEASKWLAKLLQYNVPNGKKNRGLA 629
           PD++RD T +G   D P A +WL +LL      G+  +GLA
Sbjct: 266 PDLLRDATFSGCLYDDPPAMQWLQQLLHNVNVGGRAPQGLA 306


>At5g60320.1 68418.m07560 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain,
           PF00139: Legume lectins beta domain, and PF00138: Legume
           lectins alpha domain
          Length = 675

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 18/68 (26%), Positives = 34/68 (50%)
 Frame = +1

Query: 397 CKNITDSCRP*LPKKCRWLPEDWPFPKTSPGSLWLFSRTS*EISLRLASTPMCRKPASGW 576
           C NI    RP + +  +++ ++ P P  SPGSL +   T   +   + ++     P+   
Sbjct: 598 CTNIVAESRPTMEQVIQYINQNLPLPNFSPGSLGIGVSTP-VLLESVFNSRSSLAPSISP 656

Query: 577 PSCYNTMY 600
           PS +N+M+
Sbjct: 657 PSSHNSMF 664


>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
            family protein / eIF-2 family protein similar to
            SP|O60841 Translation initiation factor IF-2 {Homo
            sapiens}; contains Pfam profiles PF00009: Elongation
            factor Tu GTP binding domain, PF03144: Elongation factor
            Tu domain 2
          Length = 1201

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 20/112 (17%), Positives = 46/112 (41%)
 Frame = +3

Query: 387  LLKLQKYHRFLSTLTPQEMPMATRGLAVSKDQSREFMAVFPDIVRDLTETGKHTDVPEAS 566
            ++ L K  R     T +  P+       +KD + EF     DI+    E G +T++   +
Sbjct: 757  IIALNKVDRLYGWKTCKNAPIVKAMKQQNKDVTNEFNIRLTDIITQFKEQGLNTEIYYKN 816

Query: 567  KWLAKLLQYNVPNGKKNRGLATILAYKMVETKENMTPENIHLANIMGWXVEM 722
            K + +       + K   G+  +L + +   ++ M  +  ++  +    +E+
Sbjct: 817  KEMGETFSIVPTSAKSGEGVPDLLLWLVQWAQKTMVEKLTYVDEVQCTVLEV 868


>At3g52525.1 68416.m05776 ovate protein, putative 83% similar to
           ovate protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 159

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 276 RRQISKTTSVTNSDAMAPRLDQPTIKSPQN--DETGSKKLLKLQKYHRFLSTLTPQEMPM 449
           +++I KT SV   D       +PT  S  N   +   +     +  H  +S+ TP   P+
Sbjct: 6   KKKILKTVSVV--DISCGNCIKPTFASIFNFFSKKPKRPSSTYRHCHSSISSATPSSTPL 63

Query: 450 ATRGLAVSKDQSREFM 497
           AT  +AV KD    ++
Sbjct: 64  ATASVAVEKDSDDPYL 79


>At5g03900.2 68418.m00368 expressed protein predicted protein,
           Synechocystis sp., PIR:S74969
          Length = 523

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 273 IRRQISKTTSVTNSDAMAPRLDQPTIKSPQNDET 374
           I + I+    V  +D +AP LD P+ KS  NDE+
Sbjct: 281 IGQYITSRGGVVAADELAPYLDVPSSKSAMNDES 314


>At5g03900.1 68418.m00367 expressed protein predicted protein,
           Synechocystis sp., PIR:S74969
          Length = 429

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 273 IRRQISKTTSVTNSDAMAPRLDQPTIKSPQNDET 374
           I + I+    V  +D +AP LD P+ KS  NDE+
Sbjct: 281 IGQYITSRGGVVAADELAPYLDVPSSKSAMNDES 314


>At1g27390.1 68414.m03339 mitochondrial import receptor subunit
           TOM20-2 (TOM20-2) identical to mitochondrial import
           receptor subunit TOM20-2 SP:P82873 from [Arabidopsis
           thaliana]
          Length = 210

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 722 VPTYQLMLNDIIGRYGDETRVFPGXHRRPRCXXXXXXPMLFY 847
           +P  +LMLND I +  +   + PG H+   C         FY
Sbjct: 51  IPEAKLMLNDAISKLEEALTINPGKHQALWCIANAYTAHAFY 92


>At4g17785.1 68417.m02654 myb family transcription factor (MYB39)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 360

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 363 NDETGSKKLLKLQKYHRFLSTLTPQEMP 446
           N+ T  + +LKLQ  H+ L  +TP+ +P
Sbjct: 160 NNNTALEDILKLQLIHKMLQIITPKAIP 187


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,368,116
Number of Sequences: 28952
Number of extensions: 549491
Number of successful extensions: 1295
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 12,070,560
effective HSP length: 85
effective length of database: 9,609,640
effective search space used: 4372386200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)